Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0634
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    27   0.41 
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    25   2.2  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   3.8  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 342 QRLIQRSSITARGIRRISWASDPVLCQTACLSTATNAAVEA 220
           + ++QR  + ARG  R+ +A D     TA  S  TNA  EA
Sbjct: 100 EEVMQRIDVLARGHPRVVFAGDLNAWHTAWGSCRTNAKGEA 140


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 159 PSCCSLPQKRD*KERVYSIPSLQRRRWSLCSSKQF 263
           PS   L   R     VYS+    RRRWSLC    F
Sbjct: 9   PSGARLSISRGSPTGVYSV----RRRWSLCQKLHF 39


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 204  VYSIPSLQRRRWSLCSSKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVI-- 377
            +  +P+ +   W L         Q  W +   E+L  L + A+ N +  +++  RLVI  
Sbjct: 1619 IADVPTNRLNHWRLIQKHM----QHIWNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQ 1674

Query: 378  -DHIQVNRAP 404
             D++ V++ P
Sbjct: 1675 EDNVAVSKWP 1684


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,845
Number of Sequences: 2352
Number of extensions: 10330
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)