Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0634
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   114   5e-26
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...    91   5e-19

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  114 bits (274), Expect = 5e-26
 Identities = 61/143 (42%), Positives = 72/143 (50%)
 Frame = +1

Query: 46  YSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPFRRF 225
           YSR P+N  KSCKARGS+LRVHFKNT+E AM +R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 226 NGGVGRCAQASSLAQHRVAGPRNPPNSSCSY*GXXXXXXXXXXXXXXXXXXXXXXXXXXX 405
           +GG+GR AQ       +   P    +                                  
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 406 XXXXXXXXXHGRINPYMSXPCHI 474
                    HGRINPYMS PCHI
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHI 148



 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 49/99 (49%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
 Frame = +3

Query: 252 SKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCL-XQTYIP 428
           +KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  L  +TY  
Sbjct: 75  TKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRA 134

Query: 429 CSRSHQPLHVXSLPHSKXVSANAKMLS*GSPLTDDAPAK 545
             R +   ++ S  H + + A  + +   S  TDDA  K
Sbjct: 135 HGRINP--YMSSPCHIEVILAEKEDVV--SKPTDDAAPK 169


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score = 91.1 bits (216), Expect = 5e-19
 Identities = 41/60 (68%), Positives = 48/60 (80%)
 Frame = +1

Query: 46  YSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPFRRF 225
           YSR P+N  KSCKARGS+LRVHFKNT+E AM +R MPLRRA  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65



 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = +3

Query: 309 LQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCL-XQTYIPCSRSHQPLHVXSLPHSKXV 485
           L LL+NAESNA+ K LDVD LVI+HI V RA  L  +TY    R +   ++ S  H + +
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINP--YMSSPCHIEVI 123

Query: 486 SANAKMLS*GSPLTDDAPAK 545
            A  + +   S  TDDA  K
Sbjct: 124 LAEKEDVV--SKPTDDAAPK 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,053,967
Number of Sequences: 27780
Number of extensions: 236327
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)