Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0634
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   112   2e-25
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   111   3e-25
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    29   1.5  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    27   6.2  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    27   6.2  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    27   6.2  
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    27   8.3  
At4g29920.1 68417.m04257 heat shock protein-related contains sim...    27   8.3  
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d...    27   8.3  
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac...    27   8.3  
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac...    27   8.3  
At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family pr...    27   8.3  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  112 bits (269), Expect = 2e-25
 Identities = 67/149 (44%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPF 216
           M +YS+EPDN  KSCKARGS+LRVHFKNT ETA  IRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 217 RRFNGGVGRCAQASSLAQHRVAGPRNPPNSS---CSY*GXXXXXXXXXXXXXXXXXXXXX 387
            RF  GVGR AQA +  +H     R P  S+                             
Sbjct: 61  TRFCRGVGRTAQAKN--RHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHI 118

Query: 388 XXXXXXXXXXXXXXXHGRINPYMSXPCHI 474
                          HGRINPYMS PCHI
Sbjct: 119 QVNQAAKQRRRTYRAHGRINPYMSNPCHI 147



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 273 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 401
           QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A
Sbjct: 81  QGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQA 123


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  111 bits (267), Expect = 3e-25
 Identities = 66/149 (44%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
 Frame = +1

Query: 37  MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKECIPF 216
           M +YS+EPDN  KSCKARG++LRVHFKNT ETA  IRK+PL +A RYL++VI  K+ IPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 217 RRFNGGVGRCAQASSLAQHRVAGPRNPPNSS---CSY*GXXXXXXXXXXXXXXXXXXXXX 387
            RF  GVGR AQA +  +H     R P  S+                             
Sbjct: 61  TRFCRGVGRTAQAKN--RHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHI 118

Query: 388 XXXXXXXXXXXXXXXHGRINPYMSXPCHI 474
                          HGRINPYMS PCHI
Sbjct: 119 QVNQAAKQRRRTYRAHGRINPYMSNPCHI 147



 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +3

Query: 273 QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRA 401
           QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A
Sbjct: 81  QGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQA 123


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -2

Query: 418 VCXRQGARFT*MWSITSLSTSKVLL-SAFDSAFLNNCKRNSADFLGQRPCVVPNCLLEHS 242
           VC      F  +  I S+ + K L+ S   ++ + NC  N  + +     V P  ++EH+
Sbjct: 44  VCISDNMSFPVIQPILSVESKKFLIDSVSPTSVIANCGSNQLELVSDSITVSPTSVIEHT 103

Query: 241 DQRRR*SDG 215
           ++      G
Sbjct: 104 EEEEEEEGG 112


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
 Frame = -3

Query: 297 RISWASDPVLCQTA------C-LSTATN--AAVEATEWNTLFLFNHV 184
           R+SWASD +LCQ        C +  A+N     EAT++ T  + +H+
Sbjct: 9   RVSWASDSMLCQVKLFLSDDCPVKVASNLPPGFEATDYATKRIISHI 55


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 265 AQHRVAGPRNPPNSSCSY 318
           AQ   A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 49   SREPDNPAKSCKARGSNLRVHFKNTYETAMXIRKMPLRRAVRYLKNVIEKKE 204
            SR+P     S       + VH +N Y   +    +P R +++ + N+IEK E
Sbjct: 1222 SRKPGRVIDSVYYENVRVLVHEENIYR--LECSSLPSRLSIQLMDNIIEKPE 1271


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 204 VYSIPSLQRRRWSLCSS 254
           V SIPSL RR W L SS
Sbjct: 43  VVSIPSLSRRSWRLASS 59


>At4g29920.1 68417.m04257 heat shock protein-related contains
           similarity to heat shock protein 101 [Triticum aestivum]
           gi|6013196|gb|AAF01280
          Length = 1017

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 368 ASYRPHSGKSRALPXADVHTVLTVASTPTCRLPATFEXCLSEREDAVLR*PPY 526
           ASY+ +       P  DVH  L   S P+  L  T     SE    V+   P+
Sbjct: 403 ASYQTYMRCQMKQPPLDVHWALQAVSIPSGGLSLTLHASSSEMASQVMEMKPF 455


>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
           domain PF01694, Rhomboid family
          Length = 389

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 382 WSITSLSTSKVLLSAFDSAFLNNCKRNSA 296
           W + ++  + + L A  S F+NNC +NSA
Sbjct: 57  WLVPAIVVANIALFAI-SMFINNCPKNSA 84


>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 575

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 TQGRWPKKSAEFLLQLLRNAESN 338
           +  RWPK   E L+++ +N E+N
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEAN 416


>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
           (GT2) identical to GT2 factor [Arabidopsis thaliana]
           GI:416490, GI:2664202 (DNA binding factor GT-2 from
           Arabidopsis)
          Length = 498

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 TQGRWPKKSAEFLLQLLRNAESN 338
           +  RWPK   E L+++ +N E+N
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEAN 339


>At1g50240.1 68414.m05633 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 1021

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 519 GYLRTASSRSLRHXSNVAGXRHVGVDATVSTVCTSAXG 406
           G L  AS   ++  SN  G   +GV  T+S++C    G
Sbjct: 573 GKLSNASPEDIKKTSNRIGLSPIGVVWTISSICHCLSG 610


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,353,819
Number of Sequences: 28952
Number of extensions: 217240
Number of successful extensions: 517
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)