Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0633
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    29   2.4  
At1g13870.1 68414.m01628 expressed protein similar to KTI12 prot...    29   2.4  
At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog...    28   4.1  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    28   4.1  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   5.4  

>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 GKCACCPACVTLLGEGATCKIYS 189
           G+C  CP+ + LLG   TCKI S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At1g13870.1 68414.m01628 expressed protein similar to KTI12 protein
           (SP:P34253) {Saccharomyces cerevisiae}; contains Prosite
           PS00070: Aldehyde dehydrogenases cysteine active site
          Length = 302

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 508 IIILDELHTLSRYPDRVTCIIHTISFRFCSVY 413
           I+I+D L+++  Y   + CI      R+C VY
Sbjct: 76  IVIVDSLNSIKGYRYELWCIARAAGIRYCVVY 107


>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related contains weak similarity to
           Swiss-Prot:P53349 mitogen-activated protein kinase
           kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
           MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
           SWIM zinc finger
          Length = 273

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 166 GATCKIYSKELGETPSAVCKEPLKCIKRV 252
           GATC +Y+  L  TP+  C +  K  K +
Sbjct: 53  GATCNVYTVTLMATPTCTCPDRKKPCKHI 81


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 558 NPSLPNWPQLLETYENI*LYSTSYIHCPDILTG 460
           NP+LP  P+ L T  +  LY    +   D+LTG
Sbjct: 40  NPALPTGPRGLITISDAELYQIGRVRSQDLLTG 72


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 93  LRANKWWLYAWIFFTVVC 40
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,760,745
Number of Sequences: 28952
Number of extensions: 252761
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)