Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0632
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0075 - 14340458-14340551,14340643-14340814,14340895-143410...    30   1.4  
11_06_0003 - 19155407-19155953,19156114-19156148                       30   1.8  
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936...    27   9.7  

>09_04_0075 -
           14340458-14340551,14340643-14340814,14340895-14341066,
           14341617-14341811,14341886-14342053,14342150-14342335,
           14342797-14342881,14342896-14343206,14344222-14344569
          Length = 576

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +1

Query: 28  EFMPWLVKEVSLEIESIITSRDVITEIVRDVVEARGELY-RNVAEREE--NEQGRNEPED 198
           EFM WL+  +  +++S   +R +I +  +  +E   E + +++ E++E  +EQ  +   D
Sbjct: 338 EFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVEKKEDGDEQNGDAGSD 397

Query: 199 SITXPSAV 222
            +T  S V
Sbjct: 398 IVTETSRV 405


>11_06_0003 - 19155407-19155953,19156114-19156148
          Length = 193

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
 Frame = +1

Query: 40  WLVKEVSLEIESI--------ITSRDVITEI-VRDVVEARGELYRNVAEREENEQGRNEP 192
           W+ +E+S  IES         I S+ V  ++ VRD V +R E +  VAE EE E+   E 
Sbjct: 6   WIYREISY-IESYTNWSHHGEIPSKQVPNQVTVRDEVVSRDEDFMVVAEEEEEEEEEEEE 64

Query: 193 ED 198
           E+
Sbjct: 65  EE 66


>04_04_0959 +
           29692740-29693035,29693102-29693267,29693433-29693612,
           29693703-29693771,29693888-29694088,29694187-29694240,
           29694325-29694386,29694488-29694620,29694789-29694899,
           29695008-29695104,29695638-29695714,29696129-29696194,
           29696431-29696583,29697392-29697447,29697524-29697584,
           29697656-29697766,29698010-29698144,29698217-29698447,
           29699001-29699075,29699161-29699282,29699381-29699453,
           29699538-29699642,29699728-29699895,29700079-29700148,
           29700224-29700375,29700574-29700651,29700744-29700836,
           29700961-29701098,29701237-29701276,29701350-29701423,
           29701777-29701911,29702345-29702464,29702778-29702939
          Length = 1287

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 LLRERRMNRGGTSPRTASLXPPPCLRRGRKSISKMTRR 265
           LL ER+   G   P  AS   P CLRR R+S  +  RR
Sbjct: 43  LLPERQAPEG-RRPLAASRCLPTCLRRHRRSSRRSHRR 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,215,706
Number of Sequences: 37544
Number of extensions: 214187
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)