Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0632
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 28 7.5
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25) 28 7.5
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32) 28 7.5
SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_23087| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 27 9.9
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -2
Query: 122 TTSRTISVMTSRLVMMDSISSDTSFTSQGMNSSSTPLS 9
TT++T + +++ S SS +S +S +SSS+PLS
Sbjct: 223 TTTKTTTANNKIIILSSSSSSSSSSSSSLSSSSSSPLS 260
>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1273
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 585 DEIPPWFLKEYALEIGPILTS 605
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 373 RKFGLVLLNSMRFIYNHVYNVYLCC 447
RK + +LN RFI VYNV L C
Sbjct: 220 RKISVPVLNDSRFIGISVYNVVLLC 244
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 307 DEIPPWFLKEYALEIGPILTS 327
>SB_462| Best HMM Match : RVT_1 (HMM E-Value=7.7e-25)
Length = 863
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 424 DEIPPWFLKEYALEIGPILTS 444
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 97 DEIPPWFLKEYALEIGPILTS 117
>SB_41552| Best HMM Match : RVT_1 (HMM E-Value=5.4e-32)
Length = 1241
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 463 DEIPPWFLKEYALEIGPILTS 483
>SB_29272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 719
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 326 DEIPPWFLKEYALEIGPILTS 346
>SB_23087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 140 SSPLASTTSRTISVMTSRLVMMDSISSDTSFTSQG 36
S P+ ST+SRT + + ++DTSFT++G
Sbjct: 39 SIPMTSTSSRTHAAHSMATRSATQTTADTSFTTEG 73
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 182 DEIPPWFLKEYALEIGPILTS 202
>SB_18871| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 546
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 115 DEIPPWFLKEYALEIGPILTS 135
>SB_10707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 25 EEFMPWLVKEVSLEIESIITS 87
+E PW +KE +LEI I+TS
Sbjct: 229 DEIPPWFLKEYALEIGPILTS 249
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 388 VLLNSMRFIYNHVYNVYLCCCAXLNMH*FKYTCIK 492
V LN + +Y ++ +L CC L +YT ++
Sbjct: 201 VCLNGCKLVYGTTFSEFLSCCKRLKTLLLRYTPVR 235
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,520
Number of Sequences: 59808
Number of extensions: 240154
Number of successful extensions: 690
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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