Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0632
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64170.1 68418.m08057 dentin sialophosphoprotein-related cont...    30   1.2  
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica...    28   4.7  
At3g47680.1 68416.m05192 expressed protein contains similarity t...    28   6.1  
At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ...    28   6.1  

>At5g64170.1 68418.m08057 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 566

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 43  LVKEVSLEIESIITSRDVITEI-VRDVVEARGELYRNVAEREENEQGRNEPE 195
           +V ++SLE  S    + VI ++ VR  +  R  LYR     E+   G N PE
Sbjct: 423 VVDDISLEATSFRQLQQVIEQLDVRTKLCIRDSLYRLAKSAEQRHHGGNRPE 474


>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P31244 DNA
           repair protein RAD16 {Saccharomyces cerevisiae};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 638

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -1

Query: 225 RHGGGXSDAVLGLVPPLFILLSLSNVSVQFSSGFHHVTYDFRDDVTTRDDGLD 67
           RH     +++ GLV  + + L   N+ +   +  H +  D   + TT D  +D
Sbjct: 494 RHSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAID 546


>At3g47680.1 68416.m05192 expressed protein contains similarity to
           hypothetical proteins of [Arabidopsis thaliana]
          Length = 302

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 567 GSEPRGYV*WSXIYSYYG 620
           G+E +GY  WS I +YYG
Sbjct: 72  GNEQKGYAFWSRIAAYYG 89


>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 862

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 22  DEEFMPWLVKEVSLEIESIITSRDVITEIVRDVVEAR 132
           D  F  W  KE+   +ES++T+  V+ +  + +VE +
Sbjct: 708 DHSFGSWQAKELLDHLESVLTNEPVVVKRGQHIVEVK 744


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,833,573
Number of Sequences: 28952
Number of extensions: 180251
Number of successful extensions: 532
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)