Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0630
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 31 0.12
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 29 0.64
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 27 2.6
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.6
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 27 3.4
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 26 4.5
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 4.5
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 6.0
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 25 7.9
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 31.5 bits (68), Expect = 0.12
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 454 RPAERHSRWSKMQSRNYSYTATEEV-RSERWREMQESRNNDICGRCCHTGNHVSNNIMYQ 630
R RH+R Q++N + E +S+RWR+ N R N+ S N+ +
Sbjct: 1443 RSVSRHTRREPQQAQNLNARREHESQKSDRWRQ------NGNVNRNPRVSNNNSTNVSRE 1496
Query: 631 FPSPPGYRTARDDK 672
S +RT+ D+K
Sbjct: 1497 RSSEANHRTSNDNK 1510
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 460 AERHSRWSKMQSRNYSYTATEEVRSERWREMQESRNNDICGRC 588
A H KM S + + E R +RWRE E RN D RC
Sbjct: 149 AIEHPPPRKMTSSEKTRSENRE-RKKRWREQNEERNKDNDLRC 190
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 376 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 468
QLDPR+ L Q PRR LSR RL P R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236
>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 281
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +1
Query: 346 GQRERGTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSYTATEE 525
GQR+ +R + RS L + L L P R++ + + +YS E
Sbjct: 176 GQRQEDLQRQLENERSRLIARFSHSLYSFQHGLSFGSPQNRNTPLQRQSADSYSTPVCIE 235
Query: 526 VRSERWREM 552
V SE W+++
Sbjct: 236 VDSEDWKDL 244
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 690 IFPWPPFIVPRSTISRWR 637
I PWP F +P +S WR
Sbjct: 311 IMPWPQFHMPHMDLSVWR 328
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +1
Query: 364 TERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSYTATEEVRSERW 543
T P+LDP++GL+R P L +P P A + Y T E + +
Sbjct: 379 TATPRLDPKTGLSRYRPGGLG--IP---PETEASHFEHLLRPYMEKYHMTLEEFTHAYNY 433
Query: 544 REMQE 558
+++ E
Sbjct: 434 QQIHE 438
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 511 CNCSFLIASLTT-SNAFRLVYLGAAEELNEIGDVALDERVRSVD 383
C + + SL+ SN+ +VY+G E NE+ +V +D ++D
Sbjct: 262 CGKTVISQSLSKYSNSDLIVYVGCGERGNEMAEVLMDFPELTID 305
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 6.0
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 370 RPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSYTATEEVRSERWRE 549
RPQ DP G + P R++ SR H K++ R S EEVR + RE
Sbjct: 6 RPQFDPARGHSEMAPTRIT-------SSRALPAH---LKLKYRQESQGTEEEVRKQDLRE 55
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 597 CMATPSTDIVISTFLHFAPSFASDFFSCCVTVVS 496
C+ P+T +I +F+H F+S + C+ ++S
Sbjct: 257 CLIVPATFTIIDSFIHTYDGFSS--MTQCLLIIS 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,122
Number of Sequences: 5004
Number of extensions: 53667
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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