Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0630
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 33 0.16
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939... 31 0.67
05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644 31 0.67
06_01_0010 - 151694-151951,152433-152489,152683-152774,153432-15... 31 1.2
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 30 2.0
01_01_0005 + 21247-21294,22615-22847,22962-23033,23492-23577,244... 29 2.7
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 29 3.5
12_01_0537 - 4215833-4216005,4216168-4216366,4216399-4216497,421... 29 4.7
10_07_0125 - 13096520-13097200,13098209-13098898 28 6.2
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 28 6.2
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 28 8.2
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2
Query: 305 TNSRMSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQ 484
T S+ L+ G GK G P+GR WI P KG + +G +D+ K + G
Sbjct: 119 TLSKEDVLVAIDG-GKSEGGPSGRYWILDPIDGTKGFIRGDQYAIGLALLDEGKVVLGAM 177
Query: 485 RC 490
C
Sbjct: 178 AC 179
>12_02_1187 -
26793455-26793496,26793599-26793717,26793813-26793939,
26794382-26794520,26794565-26794833,26794923-26795056,
26795630-26795750
Length = 316
Score = 31.5 bits (68), Expect = 0.67
Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = -2
Query: 562 DFLAFRAIFRFGLLQLLCNCSFLIASLTTSNAFRLVYLGAAEELNEIG---DVALDERVR 392
+ LA A F G +Q L A L + +V AAE L IG ++L E
Sbjct: 47 NLLAHEAAFALGQMQDAEAIPALEAVLKDLSLHPIVRHEAAEALGAIGLEKSISLLEESL 106
Query: 391 SVDPVAAVRCPVPFALTLPEEQGRHSGVSFA 299
+VDP V+ A+ EEQ SGV A
Sbjct: 107 AVDPAVEVQETCELAIRRIEEQKNTSGVESA 137
>05_03_0403 - 13534954-13535462,13537895-13538050,13538545-13538644
Length = 254
Score = 31.5 bits (68), Expect = 0.67
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 466 RHSRWSKMQSRNYSYTATEEVRSER-WREMQESRNNDICGRCCHTGNHVSNNIMYQFPSP 642
R S+W + Q ++ EE + R WR+ ++ +ICG GNH+ Y + SP
Sbjct: 66 RKSKWEQQQEEVELFSEEEECSTTRFWRD-PDTEFCNICGD--DKGNHLELMCPYNYLSP 122
Query: 643 PGYRTAR 663
Y R
Sbjct: 123 AAYFPCR 129
>06_01_0010 -
151694-151951,152433-152489,152683-152774,153432-153531,
153585-154211,154300-154638,154740-154991,155083-155556
Length = 732
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +1
Query: 364 TERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSYTATEEVRSERW 543
T + +DP+ G A + R + V R S+P H +QS Y + R+
Sbjct: 469 TAQDLVDPQQGTAARRIRLVCS-VERASVSQPVSSH-----LQSE-YEAGSCCNTRNSSN 521
Query: 544 REMQESRNNDICGRCCHTGNHVSNN 618
+ + R+ D G CC+TG+ +N+
Sbjct: 522 NKKESVRSEDEAGSCCNTGSSSNNH 546
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 478 WSKMQSRNYSYTATEEVRSERWREMQESRNNDICGRCCHTGNHVSNNIMYQFPS 639
W+ Q+RN S + + S + + E N C HT + + +YQ PS
Sbjct: 610 WNASQTRN-SISLACSITSSQQEVLDEFHNEHDSSSCSHTEDSPDGDSLYQLPS 662
>01_01_0005 +
21247-21294,22615-22847,22962-23033,23492-23577,
24445-24519,24883-25391
Length = 340
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +1
Query: 328 ALLAG*GQRERGTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYS 507
A+ G G+ + R +L+PR+ ++ R + RLH P ++ W SR S
Sbjct: 244 AVKNGKGKEPAESSRNKLNPRTAGGKEDSRYVENGRMRLHTGNPCKQ--SWRTSNSRAAS 301
Query: 508 YTATEEVRSER 540
+ +E++ E+
Sbjct: 302 SVSPDELKREQ 312
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 363 APFPLPLPCQKSRVDILELVLPLFDPFAPYSISLPKYCLPMEHHR 229
+P PLPLP + I +F PF Y + + + LP+ HH+
Sbjct: 73 SPSPLPLPRATKQPFI-----GIFSPFKSYPLQVIRESLPLAHHQ 112
>12_01_0537 -
4215833-4216005,4216168-4216366,4216399-4216497,
4216599-4216809,4217264-4217466,4217557-4217633,
4217874-4217949,4218342-4218425
Length = 373
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 347 GKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRC 490
GK G P+GR+W+ P KG + + +D+ K + G C
Sbjct: 126 GKSEGGPSGRHWVLDPIDGTKGFLRGDQYAIALALLDEGKVVLGVLAC 173
>10_07_0125 - 13096520-13097200,13098209-13098898
Length = 456
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Frame = -3
Query: 411 PLTSESGAWIQLRPFGAPFPLPLPCQKSRV-----DILELVLPLFDPFAPYSISLPK 256
PL+ W+ L P F P P V D LE VLP F PFA + P+
Sbjct: 32 PLSPFDAYWVALPPVRRVFLFPSPPPFGDVVRALRDSLEAVLPAFYPFAGALVYSPE 88
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 257 LGSEIEYGANGSKSGKTNSRMSTLLFWQGKGKGNG 361
+G+ YGAN +S N M T +FW G + +G
Sbjct: 190 IGNNAFYGANYIQSVTPNLSMGTEIFWLGHQRKSG 224
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 372 PFGAPFPLPLPCQKSRVDILELVLPLFDPFAPYS 271
P P P P PC SR D + + DPF ++
Sbjct: 62 PDAPPPPPPHPCDVSRADFAPYLAAVADPFGRFA 95
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,471,472
Number of Sequences: 37544
Number of extensions: 391402
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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