Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0630
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)               77   1e-14
SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)                    77   1e-14
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)                40   0.002
SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)                      33   0.22 
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    31   0.90 
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)                   31   1.2  
SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)                 29   2.7  
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  29   3.6  
SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_40563| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_30545| Best HMM Match : Phage_integrase (HMM E-Value=0.1)           28   6.3  
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)                      28   8.4  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   28   8.4  
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)                28   8.4  
SB_40391| Best HMM Match : PSRP-3_Ycf65 (HMM E-Value=5)                28   8.4  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       28   8.4  

>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
          Length = 837

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
 Frame = +2

Query: 317 MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQ 496
           MST+L W  K KG     G+ W+HAP+SL +  V Y VKF G T+V + KG    +    
Sbjct: 1   MSTVLKWASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAIT 58

Query: 497 ETTVTQQLKKSEA-KDGAKCKKVEITISVDGVAIQETTFRTI*CTSFPLH 643
           +      +KKSEA    +K +KV++ I++DGV+I+++  + +   S+PLH
Sbjct: 59  KVQFANHIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKEV-LHSYPLH 107


>SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)
          Length = 144

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
 Frame = +2

Query: 317 MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQ 496
           MST+L W  K KG     G+ W+HAP+SL +  V Y VKF G T+V + KG    +    
Sbjct: 1   MSTVLKWASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAIT 58

Query: 497 ETTVTQQLKKSEA-KDGAKCKKVEITISVDGVAIQETTFRTI*CTSFPLH 643
           +      +KKSEA    +K +KV++ I++DGV+I+++  + +   S+PLH
Sbjct: 59  KVQFANHIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKEV-LHSYPLH 107


>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
          Length = 325

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
 Frame = +1

Query: 352 RERGTERP--QLDPRSGLARQGPRRLSR*VPRLHPSR----PAERHSRWSK----MQSRN 501
           RE   E P  QL   +G A + P R SR  P + P R    PAE+H R SK    +Q RN
Sbjct: 30  RETPPETPPVQLKHLAGPAEK-PHRPSRETPPVQPRRNPTCPAEKHHRSSKETPPVQPRN 88

Query: 502 YSYTATEEVRSERWREMQESRNNDICGRCCHTGNHVSNNIMYQFPSPPGYRTARDDK 672
            +  A +  RS R  ++ + RN        H  +  +  +  + P+ P  + +R  K
Sbjct: 89  LAGPAEKPHRSRRETQLAQPRNPTSPAEKPHQSSKETQPVQQRNPAGPAKKPSRSSK 145


>SB_11499| Best HMM Match : C1_1 (HMM E-Value=1.5)
          Length = 572

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +2

Query: 518 LKKSEAKDGAKCKKVEITISVDGVAIQETTFRTI*CTSFPLHRDIVLRGTIXG 676
           +K+S   D  + +K ++T  +  V  + +T   I CT + L  D+  RGTI G
Sbjct: 89  MKRSHDSDDEEEEKDDVTYDLRQVTTRHSTKMRIDCTDYELSVDLPTRGTIEG 141


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 380  WIHAPDSLVKGHVAYLVKFLGCTQVDQPKGI 472
            W H P+ L+KG V Y  ++LG   V +  G+
Sbjct: 1307 WHHEPEVLLKGSVNYTTQYLGSHMVKEISGV 1337


>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
          Length = 677

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +1

Query: 439 RLHPSRPAERHSRWSKMQ-SRNYSYTATEEVR---SERWREMQESRNNDICGRCCHTGNH 606
           R HP    E +S     + S+N+  T+  E R   SE+W+    SRN+ + G  C    +
Sbjct: 23  RAHPFGEKEENSHHDLAEGSQNHLSTSETEKRNFQSEKWKIYSSSRNDGLGGDVCEEELY 82

Query: 607 VSNN 618
           V  N
Sbjct: 83  VRGN 86


>SB_53704| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-18)
          Length = 722

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 633 KLVHYIVRNVVSCMATPSTDIVISTFLHFAPSFASDFFSC 514
           +++HY+    ++C   P+T +  S  LH+  S  +    C
Sbjct: 240 QVIHYVETLCLTCAMVPNTPLYFSKLLHYGNSLINPVLYC 279


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 9   YHHH*NNINNSWPSLVQRRTSAE 77
           Y H+  +INN+WP+  ++R S +
Sbjct: 94  YRHYGGSINNAWPTFTEKRFSED 116


>SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +1

Query: 367 ERPQLDPRSGLARQGPRRLSR*VPRL---HPSRPAE-RHSRWSKMQSR 498
           +RPQL P  G   Q P  +S  VP+    HP +P   +  R    QSR
Sbjct: 273 QRPQLPPVGGFPGQAPPHMSTHVPQAGFPHPDQPQRLQEVRGDARQSR 320


>SB_40563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/75 (25%), Positives = 36/75 (48%)
 Frame = +2

Query: 467 GIRGGQRCNQETTVTQQLKKSEAKDGAKCKKVEITISVDGVAIQETTFRTI*CTSFPLHR 646
           G  G Q+  QE    ++   S+ ++  + +K ++T  +  V  + +T     CT + L  
Sbjct: 18  GPSGLQQQQQEGRGKKRSHDSDDEEKEEEEKDDVTHDLRQVTTRHSTKMHTDCTDYELSV 77

Query: 647 DIVLRGTIXGGQGNI 691
           D+  RGTI    G++
Sbjct: 78  DLPTRGTIKEALGDV 92


>SB_30545| Best HMM Match : Phage_integrase (HMM E-Value=0.1)
          Length = 311

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 551 CKKVEITISVDGVAIQETTFRTI*CTSF 634
           CK V    SV G   QET FRT+  T+F
Sbjct: 123 CKIVSAAPSVTGSVFQETLFRTMCLTAF 150


>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
          Length = 456

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 488 CNQETTVTQQLKKSEAKDGAKC 553
           C QETT+ ++L++   KD  KC
Sbjct: 127 CRQETTIVKKLQRYPRKDPPKC 148


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 361 GTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSYTATEEVRSER 540
           GT++P++       R  PR   R  PR   S  + R+SR S  +S       +    S R
Sbjct: 317 GTDQPEVTSPRATPRASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSSR 376

Query: 541 WREMQESRNN 570
               + SR +
Sbjct: 377 KLSRKSSRKS 386


>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
          Length = 1566

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 466 RHSRWSKMQSRNYSYTATEEVRSERWREMQ 555
           R   W++ + R   + AT+  RS+RW E +
Sbjct: 717 RSDGWTETEDRELVFIATDMPRSDRWTETE 746


>SB_40391| Best HMM Match : PSRP-3_Ycf65 (HMM E-Value=5)
          Length = 246

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 466 RHSRWSKMQSRNYSYTATEEVRSERWREMQ 555
           R   W++ + R   + AT+  RS+RW E +
Sbjct: 87  RSDGWTETEDRELVFIATDMPRSDRWTETE 116


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +1

Query: 448  PSRPAERHSRWSKMQSRNYSYTATEEVRSERWREMQESRNNDICGRCCHTGNHVSNN 618
            P   A+ H   +K+Q    S T  ++    R   ++  +++  C  C H  + +S+N
Sbjct: 1839 PVSSADDHEAITKLQETKGSRTLNDKRSETRKFSLERDKSDGFCNDCNHEESTMSSN 1895


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,624,676
Number of Sequences: 59808
Number of extensions: 440358
Number of successful extensions: 5019
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5016
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)