Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0629
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    80   3e-16
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    64   2e-11
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    35   0.009
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.1  

>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
 Frame = +2

Query: 260 GMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQLGIP 439
           G+ +Y K+E L    SFK RG  N + SL  +  KNGVIA S GNH   ++Y +  LG+ 
Sbjct: 127 GVPVYLKREDLTPVFSFKIRGAHNKMASLDKQSLKNGVIACSAGNHAQGVAYSARTLGVK 186

Query: 440 CIVVVPIHTALNKVNKCEQLGAKFSRHGIDMSAAKLHAMSLGKEKEM-ILH 589
             +V+P +T   K    ++LGA    HG +   AK     L KE+ + ++H
Sbjct: 187 ATIVMPQNTPEIKWRNVKRLGANVLLHGANFDIAKAECARLAKEQNLEVIH 237


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 37/119 (31%), Positives = 61/119 (51%)
 Frame = +2

Query: 266 DIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQLGIPCI 445
           +++FK E  Q  G+FK RG  NAL  L++ Q+K GV+  S+GNH  A++  +  LGIP  
Sbjct: 42  EVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHAQAIALSAKILGIPAK 101

Query: 446 VVVPIHTALNKVNKCEQLGAKFSRHGIDMSAAKLHAMSLGKEKEMILH*TAMDHPDVFS 622
           +++P+     KV   +  G +   +       +  A  +  E+E +      DHP V +
Sbjct: 102 IIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEI-SEREGLTIIPPYDHPHVLA 159


>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +2

Query: 260 GMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK--KNGVIAAST-GNHGAALSYHSTQL 430
           G +I  K EF    GS K+R     +     + K  + G I   T GN G  L++ +   
Sbjct: 37  GCNILAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRGGTIVEGTAGNTGIGLAHIARAR 96

Query: 431 GIPCIVVVPIHTALNKVNKCEQLGAK 508
           G  C++ +P   +  K++  + LGA+
Sbjct: 97  GYKCVIYMPNTQSQAKIDTLKFLGAE 122


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 564 PKLIACNLAADMSIPCLENFAPSCSHLLTLL 472
           PK  +C+L+ D+    LE   PSC     LL
Sbjct: 318 PKNSSCSLSVDVKATLLETTPPSCEVSYNLL 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,469
Number of Sequences: 5004
Number of extensions: 59974
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)