Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0629
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 73 1e-13
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981... 67 1e-11
01_06_0353 - 28647452-28647477,28647568-28649134 46 3e-05
05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531 43 2e-04
04_01_0339 - 4429742-4429840,4429932-4430012,4430232-4430291,443... 36 0.021
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 36 0.028
03_02_0162 + 6053144-6053365,6053474-6053548,6054477-6054623,605... 31 1.0
04_04_1690 - 35382241-35382553,35382614-35382933,35383601-353851... 28 7.4
04_03_0574 - 17338777-17339077,17339390-17340222,17340304-173407... 28 7.4
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257... 27 9.7
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 27 9.7
02_01_0601 + 4465775-4465924,4466070-4466531,4466613-4467445,446... 27 9.7
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 73.3 bits (172), Expect = 1e-13
Identities = 44/122 (36%), Positives = 64/122 (52%)
Frame = +2
Query: 257 LGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQLGI 436
LG++++ K+E LQ SFK RG N + LS EQ + GVI +S GNH ++ + +LG
Sbjct: 128 LGVNLWIKREDLQPVFSFKLRGAYNMMAKLSREQLERGVICSSAGNHAQGVALSAQRLGC 187
Query: 437 PCIVVVPIHTALNKVNKCEQLGAKFSRHGIDMSAAKLHAMSLGKEKEMILH*TAMDHPDV 616
++V+P+ T K E+LGA G A+ +A E+E DHPDV
Sbjct: 188 DAVIVMPVTTPEIKWRSVERLGATVVLKGDSYDEAQSYAKQ-RCEQEGRTFIPPFDHPDV 246
Query: 617 FS 622
S
Sbjct: 247 IS 248
>04_04_0753 -
27797298-27797547,27797765-27797951,27798040-27798113,
27798719-27798949,27799047-27799133,27799244-27799434
Length = 339
Score = 67.3 bits (157), Expect = 1e-11
Identities = 33/110 (30%), Positives = 59/110 (53%)
Frame = +2
Query: 257 LGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQLGI 436
+G ++FK E Q G+FK RG N++ +L D++ GV+ S+GNH AA++ + GI
Sbjct: 50 VGKQLFFKCECFQKAGAFKIRGASNSIFALDDDEASKGVVTHSSGNHAAAVALAAKLRGI 109
Query: 437 PCIVVVPIHTALNKVNKCEQLGAKFSRHGIDMSAAKLHAMSLGKEKEMIL 586
P +V+P + KV+ ++ G + + + + A + +E IL
Sbjct: 110 PAYIVIPRNAPACKVDNVKRYGGHIIWSDVSIESRESVAKRVQEETGAIL 159
>01_06_0353 - 28647452-28647477,28647568-28649134
Length = 530
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Frame = +2
Query: 239 RSHVRGLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKK-------NGVIAASTGNH 397
R H+ G+ D++ K + +TGSFK+ G+ L+S + ++ NGV ASTG+
Sbjct: 180 REHLGGM-TDLWVKHCGISHTGSFKDLGM-TVLVSQVNRLRRAPLSRPINGVGCASTGDT 237
Query: 398 GAALSYHSTQLGIPCIVVVP 457
AALS + GIP IV +P
Sbjct: 238 SAALSAYCAAAGIPAIVFLP 257
>05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531
Length = 588
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Frame = +2
Query: 239 RSHVRGLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKN-------GVIAASTGNH 397
R H+ G+ D++ K + +TGSFK+ G+ L+S + ++ GV ASTG+
Sbjct: 176 RDHLAGMN-DLWVKHCGISHTGSFKDLGM-TVLVSQVNRLRRAPLSRPIAGVGCASTGDT 233
Query: 398 GAALSYHSTQLGIPCIVVVP 457
AALS + GIP IV +P
Sbjct: 234 SAALSAYCAAAGIPAIVFLP 253
>04_01_0339 -
4429742-4429840,4429932-4430012,4430232-4430291,
4430715-4430794,4430923-4430974,4431045-4431182,
4431449-4431712,4432031-4432088,4433261-4433370,
4433604-4433795
Length = 377
Score = 36.3 bits (80), Expect = 0.021
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +2
Query: 254 GLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNGV-------IAASTGNHGAALS 412
G G I K EFLQ + S K+R A+ L D +KK + I ++GN G L+
Sbjct: 80 GCGARIAAKLEFLQPSFSVKDRP---AISMLEDAEKKGLITPGKTTLIEPTSGNMGIGLA 136
Query: 413 YHSTQLGIPCIVVVPIHTALNKVNKCEQLGAK 508
+ + G I+ +P +T+L + GAK
Sbjct: 137 FMAALKGYELILTMPSYTSLERRVTMRAFGAK 168
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 35.9 bits (79), Expect = 0.028
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = +2
Query: 254 GLGMDIYFKQEFLQYTGSFKERGVRNAL--ISLSDEQKKNGVIA-ASTGNHGAALSYHST 424
G G IY K+E L +TG+ K + NA+ + L+ K +IA G HG A +
Sbjct: 147 GTGPMIYLKREDLNHTGAHK---INNAVAQVLLAKRLGKERIIAETGAGQHGVATATVCA 203
Query: 425 QLGIPCIV 448
+ G+ CI+
Sbjct: 204 RFGLQCII 211
>03_02_0162 +
6053144-6053365,6053474-6053548,6054477-6054623,
6054749-6055300,6055387-6055622,6055914-6056130
Length = 482
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +2
Query: 260 GMDIYFKQEFLQYTGSFKER---GVRNALISLSDEQKKNGVIAASTGNHGAALSYHSTQL 430
G +I K EFL GS K+R + + D V S G+ +L+ +
Sbjct: 72 GCEILGKAEFLNPGGSVKDRVAVKIIEEALESGDLLCGGTVTEGSAGSTAISLAIVAPAY 131
Query: 431 GIPCIVVVPIHTALNKV 481
G C VV+P A+ KV
Sbjct: 132 GCKCHVVIPDDAAIEKV 148
>04_04_1690 - 35382241-35382553,35382614-35382933,35383601-35385164,
35385254-35385372,35385701-35385811,35386068-35386595,
35386702-35386881,35386957-35387556,35387646-35388066,
35388183-35388280,35388372-35389260,35389366-35389544,
35389647-35389763,35389862-35389952,35390578-35390753
Length = 1901
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 200 TNCRGSSSYTVHPRSHVRGLGMDIYFKQEFLQYTGSFKERGVRNALIS-LSDEQKKNGVI 376
T+ G S +V P S + L F + Q + F N+L S + N +
Sbjct: 1242 TDQTGQRSDSVLPSSKKKSLSFSSSFSKR-TQPSHLFSGNRASNSLKSPVPIGNVDNMIC 1300
Query: 377 AASTGNHGAALSYHSTQLGIP 439
AAST N G A + H T L +P
Sbjct: 1301 AASTVNTGDAETSHKTPLSLP 1321
>04_03_0574 -
17338777-17339077,17339390-17340222,17340304-17340765,
17340843-17341030,17341244-17341576,17341665-17341796,
17342604-17342643
Length = 762
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 233 HPRSHVRGLGMDIYFKQEFLQYTGSFKERGV 325
HP S RG+G D+ +K QY+ +++R V
Sbjct: 265 HP-SRTRGIGSDVPWKHGLPQYSSQYRKRKV 294
>06_01_0358 +
2573241-2573324,2573509-2573636,2573769-2573971,
2574129-2574254,2574522-2574680,2574857-2575050,
2575251-2575376
Length = 339
Score = 27.5 bits (58), Expect = 9.7
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Frame = +2
Query: 254 GLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKN----GV---IAASTGNHGAALS 412
G+ I K E Q S K+R +AL + D ++K GV + ++GN G ++
Sbjct: 46 GVNARIVGKLESYQPLCSVKDR---SALRMIEDAEEKGLISPGVTTLVEPTSGNLGIGVA 102
Query: 413 YHSTQLGIPCIVVVPIHTALNKVNKCEQLGAK 508
Y++ G + V+P +L+K LGA+
Sbjct: 103 YNALLKGYRFVAVMPAEYSLDKQMLLTYLGAE 134
>05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 233 HPRSHVRGLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQKKNG--VIAASTGNHGAA 406
+PR H G++ + E ++Y+ G L+S+ + +G V++ +G GAA
Sbjct: 929 YPRKHTNLFGLNPQDRIEAMRYSFQTDTLGY---LLSVLKDLYPDGLRVLSIYSGIGGAA 985
Query: 407 LSYHSTQLGIPCIVVV 454
++ H + + C+V V
Sbjct: 986 IALHRLGIPLQCVVSV 1001
>02_01_0601 +
4465775-4465924,4466070-4466531,4466613-4467445,
4467528-4467597,4467613-4467698,4467865-4468036,
4468481-4468519,4469410-4469430
Length = 610
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 233 HPRSHVRGLGMDIYFKQEFLQYTGSFKERGV 325
HP RG+G D+ +K QY+ +K+R V
Sbjct: 84 HP-GRTRGIGSDVPWKHGLPQYSSQYKKRKV 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,018,913
Number of Sequences: 37544
Number of extensions: 355661
Number of successful extensions: 859
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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