Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0629
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    45   7e-07
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   7.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.8  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 44.8 bits (101), Expect = 7e-07
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
 Frame = +2

Query: 236 PRSHVRGLGMDIYFKQEFLQYTGSFKERGVRNALISLSDEQK-KNG--VIAASTGNHGAA 406
           P+S+  G+  +IY K EFL   GS K+R     +    D+   K G  +I  ++GN G  
Sbjct: 55  PKSY--GIKCEIYAKCEFLNPGGSVKDRIAYRMIQDAEDKGLLKPGCTIIEPTSGNTGIG 112

Query: 407 LSYHSTQLGIPCIVVVPIHTALNKVNKCEQLGAKFSR 517
           L+  +   G  CI+V+P   +  K++    LGAK  R
Sbjct: 113 LAMAAAVRGYKCIIVMPEKMSDEKISTLYALGAKIIR 149


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 99  NLQIKMSVDIEFDENCDPNNPRKIKYDDI 185
           N  ++  +  E +  C P N +++KYDDI
Sbjct: 323 NQDVQKKLREEINTFC-PKNNKELKYDDI 350


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = -2

Query: 335 AHFGLHVL*NFQYTVKIPV*NKYPFPVL*HVSAGARCTNYCP 210
           A++  H+L +    V  PV   Y  P+       A    YCP
Sbjct: 51  AYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVKYCP 92


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +2

Query: 62  FKTCFYNENLQLKLANQNECRY 127
           ++ C  N+   +   N+N C+Y
Sbjct: 52  YRPCTKNQQCSILRINRNRCQY 73


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +2

Query: 62  FKTCFYNENLQLKLANQNECRY 127
           ++ C  N+   +   N+N C+Y
Sbjct: 101 YRPCTKNQQCSILRINRNRCQY 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,465
Number of Sequences: 438
Number of extensions: 4462
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)