Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0628
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    45   1e-05
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    44   2e-05
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.5  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    28   1.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   6.0  

>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 502 SNDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 627
           +N P+ KGIP+FW     NV ++ EM+   DE +L+ L DI+
Sbjct: 158 NNLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +1

Query: 514 NVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDP 648
           + KGIP+FW    +NV  LSEM+   DE  L  L DI++   E P
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP 204


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -2

Query: 619 LASILELVHHVLASFR*ALRHS*ICCTKSLGYPLHWDHWRLDSLVILLFLTLSDGSI--- 449
           LAS++  V   +A F     +S      S  Y    D + + ++ ILLF ++  G++   
Sbjct: 628 LASVMYYVAEQVAFFSLGNSNSLATVDLSQAYT-GLDSYNIFAVGILLFTSVFAGALWWC 686

Query: 448 LYRPS*LFFFSVITPWVETFIIIRFIC 368
           L++P  +   SV T W+ + I + F+C
Sbjct: 687 LHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/19 (52%), Positives = 17/19 (89%)
 Frame = -1

Query: 557 FLNMLYQKSGIPFTLGSLE 501
           +LN+L +KSG+PF+LG ++
Sbjct: 299 YLNILVKKSGMPFSLGVVQ 317


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 126  HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,472
Number of Sequences: 5004
Number of extensions: 50378
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)