Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0628
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   4.2  
U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA...    25   8.1  
U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA...    25   8.1  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.8  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    27   9.8  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 493 YRASN-DPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 657
           Y+A+  DP+ KGI DFW    R   +++E ++EHD PIL  L D+     +DP  F
Sbjct: 101 YKAAEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGF 156



 Score = 31.5 bits (68), Expect = 0.60
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +2

Query: 239 LENSSEEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDT 418
           L+N   + + IE+ FY  VH                R  IV G  EP  ++   P  +  
Sbjct: 33  LKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGEVEPTKEQIDTPILEGL 92

Query: 419 EEEELARAVQNA 454
           E ++LA   + A
Sbjct: 93  EGDQLAELYKAA 104


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 547  IFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS 654
            IF  V +  + +  +  P+L  L  ++V  H+DP S
Sbjct: 1145 IFEQVRLEKDRLPANSYPVLSKLSTVRVSQHDDPTS 1180


>U20864-10|AAK68355.1|  596|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform a protein.
          Length = 596

 Score = 24.6 bits (51), Expect(2) = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
           ND+    S SCR  G P+P+       +  SS +  D
Sbjct: 257 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 293



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 490
           + +D +  +    +TEEE+   A + A   + E+++++K
Sbjct: 297 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 335


>U20864-11|AAV58867.1|  583|Caenorhabditis elegans C. elegans ADA-2
           protein, isoform b protein.
          Length = 583

 Score = 24.6 bits (51), Expect(2) = 8.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 158 NDSGHHKSPSCRSDGIPTPECSSANPRLENSSEEFVD 268
           ND+    S SCR  G P+P+       +  SS +  D
Sbjct: 244 NDNSPGPSSSCRKKGPPSPKRRKTTRVMRESSSDSDD 280



 Score = 21.4 bits (43), Expect(2) = 8.1
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +2

Query: 374 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDK 490
           + +D +  +    +TEEE+   A + A   + E+++++K
Sbjct: 284 QASDKDTYHGMERETEEEDPPSAFETAQEFDTEDEEEEK 322


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 404 WRDDTEEEELARAVQNAAITEGEEKK 481
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 404 WRDDTEEEELARAVQNAAITEGEEKK 481
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 398 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEP 502
           +P RD+  EE LA+ ++  A   GE+++ +   EP
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEP 40


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 304 ECMYFTVKLGLNVDKLL 254
           EC++ + K GLNVDK+L
Sbjct: 188 ECLHISAKSGLNVDKVL 204


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +2

Query: 404 WRDDTEEEELARAVQNAAITEGEEKK 481
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 550 ICCTKSLGYPLHW 512
           +CC K LGYP +W
Sbjct: 52  LCCEKELGYPSNW 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,748
Number of Sequences: 27780
Number of extensions: 294237
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)