Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0628
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    44   1e-04
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    44   1e-04
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    40   0.001
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    38   0.005
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    35   0.045
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    27   9.0  
At2g26530.1 68415.m03183 expressed protein                             27   9.0  
At1g67140.1 68414.m07638 expressed protein                             27   9.0  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 657
           KG+P FW    +N  ++SE + E DE  LK L+DIK    E+P  F
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGF 170


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 657
           KG+PDFW    +N  + +E + E DE  LK L+DIK    E+P  F
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGF 169


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISF 657
           KG+P FW    +N  ++SE + E DE  L  L+DIK    E+P  F
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGF 169


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 517 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFHSGNSTF 678
           +K IPDFW   F +   L E++ E D+ I K L  + V+  +D  S +S   +F
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAKDVKSGYSITFSF 123


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHED 645
           +G+P+FW    +   ML+  + E DE  LK L+DI+    ED
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIRSCRVED 167


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDD 487
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKED 236


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 431
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
 Frame = -2

Query: 652  LWGLHAFAL*YLASILELVHHVLASFR*ALRHS*ICCTKSLGY-PLHWDHWRL-DSLVIL 479
            +W LH   L   A+ L  V HV A+   AL    I  T+  G+  L     RL +++V +
Sbjct: 816  IWALHGLLLTIEAAGLSFVSHVQAALGLALD---ILLTEESGWIDLSQGIGRLINAIVAV 872

Query: 478  LFLTLSDGSILYRPS*LFFFSVITPWVETFIIIRFICA 365
            L   LS GSIL+        + I+ W E   ++ ++ A
Sbjct: 873  LGPELSPGSILFSRC-KSVIAEISSWQEIPTLLEYVNA 909


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,267
Number of Sequences: 28952
Number of extensions: 269840
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)