Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0626
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   128   5e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    82   5e-17
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    66   3e-12
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    60   2e-10
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    33   0.025
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    26   3.7  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   3.7  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   8.6  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    25   8.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  128 bits (309), Expect = 5e-31
 Identities = 54/71 (76%), Positives = 61/71 (85%)
 Frame = +1

Query: 46  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYV 225
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D  G YHG S+ Q ER+NVY+NEA GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 226 PRAILVDLEPG 258
           PRA+LVDLEPG
Sbjct: 61  PRAVLVDLEPG 71



 Score = 68.9 bits (161), Expect = 4e-13
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +3

Query: 255 GTMDSVRSGPFGQIFRPDNFVFGQSGAGNNXAKGHYTE 368
           GTMD+V+SG FG +FRPDN ++GQSGAGN  AKGHYTE
Sbjct: 71  GTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTE 108



 Score = 55.2 bits (127), Expect = 5e-09
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +2

Query: 353 GSLHRSAELVDSVLDVVRKEAEGCDCLQGFQLTHS 457
           G     AEL D+VLDVVR+EAE CD LQGFQLTHS
Sbjct: 104 GHYTEGAELADAVLDVVRREAEACDALQGFQLTHS 138


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 81.8 bits (193), Expect = 5e-17
 Identities = 34/69 (49%), Positives = 51/69 (73%)
 Frame = +1

Query: 49  REIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 228
           REI+ +QAGQCGNQIG++FW+ +  EHGI P GT    +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 229 RAILVDLEP 255
           RAIL+DLEP
Sbjct: 63  RAILIDLEP 71



 Score = 33.1 bits (72), Expect = 0.025
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = +2

Query: 377 LVDSVLDVVRKEAEGCDCLQGFQLTHS 457
           + + ++D++ +EA+G D L+GF L HS
Sbjct: 114 IFEDIMDMIDREADGSDSLEGFSLLHS 140



 Score = 29.1 bits (62), Expect = 0.40
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +3

Query: 261 MDSVRSGPFGQIFRPDNFVFGQS--GAGNNXAKGH 359
           ++++ S  +G ++ P+N +  ++  GAGNN A G+
Sbjct: 74  VNNILSDTYGSLYNPENILITKNGGGAGNNWANGY 108


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = +1

Query: 46  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLE--RINVYYNEATGGK 219
           MREI+ I  GQ G QIG   WE+   EHGI P G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 220 YVPRAILVDLEP 255
           YVPR+I VDLEP
Sbjct: 61  YVPRSIYVDLEP 72



 Score = 45.2 bits (102), Expect = 6e-06
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +3

Query: 261 MDSVRSGPFGQIFRPDNFVFGQSGAGNNXAKGHYT 365
           +D VR+GP+  +F P+  + G+  A NN A+GHYT
Sbjct: 75  IDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYT 109



 Score = 34.3 bits (75), Expect = 0.011
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +2

Query: 374 ELVDSVLDVVRKEAEGCDCLQGFQLTHS 457
           ELVD V D +R+ A+ C  LQGF + HS
Sbjct: 113 ELVDEVTDKIRRIADNCSGLQGFLVFHS 140


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
 Frame = +1

Query: 46  MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTG------TYHGDSDLQLERINVYYNEA 207
           MRE++ +  GQ G QIG   WE+   EHGI P G        H ++    +    +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 208 TGGKYVPRAILVDLEP 255
             GK+VPR+I VDLEP
Sbjct: 61  GQGKFVPRSIYVDLEP 76



 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = +3

Query: 261 MDSVRSGPFGQIFRPDNFVFGQSGAGNNXAKGHYT 365
           +D VR+GP+  +F P+  V G+  A NN A+GHYT
Sbjct: 79  IDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYT 113



 Score = 35.1 bits (77), Expect = 0.006
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +2

Query: 374 ELVDSVLDVVRKEAEGCDCLQGFQLTHS 457
           E++DSVL+ +R+ A+ C  LQGF + HS
Sbjct: 117 EMIDSVLERIRRMADNCSGLQGFLVFHS 144


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 33.1 bits (72), Expect = 0.025
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +2

Query: 98  LSSGKLYPMSMASIRRERITETPTSSWSASTCTITRRPEES 220
           L  GKL P+  A +++ ++    TS++S +T  +T+  EES
Sbjct: 401 LEGGKLLPLPTAPVQQSKVQINGTSAYSTATDAVTKDAEES 441


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 85  NQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERI 186
           N++G    EV++++  +DPT     + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 279 GPFGQIFRPDNFVFGQSG 332
           GP+G +F P  F+F  +G
Sbjct: 157 GPYGTMFLPQQFIFDSNG 174


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 64  IQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEAT 210
           I  G+    + A  + +  D   I P G Y+   ++  E + +YY  AT
Sbjct: 578 ILQGKIEVTVNATTFRMKKDGVFIVPRGNYYSIKNIGKEAVRLYYTHAT 626


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 228 SGYPCGPGAGTMDSVRSG-----PFGQIFRPDNFVFGQSGAGNNXAKG 356
           +G P GPG G  +    G     PFG IF  DN +FG     N   +G
Sbjct: 77  NGQPGGPGGGPGEGFPGGGFGFDPFGDIF--DN-IFGGRRRQNAVRRG 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,261
Number of Sequences: 5004
Number of extensions: 42787
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)