Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0626
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.45 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   0.79 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   9.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.7  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   9.7  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   9.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +2

Query: 224 CLGLSLWTWSRDNGLCTLGTIR 289
           CLG  LWT  RD G    GT R
Sbjct: 448 CLGGELWTVLRDKGHFDDGTTR 469


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 380 VDSVLDVVRKEAEGCDCLQG 439
           +DS+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 454  LTWRRNRSWSWKRYSFP 504
            LTW   R W   RY+ P
Sbjct: 1189 LTWNEKRFWERLRYAIP 1205


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 321 QRQSCPDGRSDRMVPSVQSPLSRLQVHKDSPR 226
           Q+Q+ P G +   +PS   P  R Q  +   R
Sbjct: 243 QQQAAPQGAASANLPSPLYPWMRSQFERKRGR 274


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 15  LLEKCFYSI*NEGNCTHTGRSMRQ 86
           LL   F  + +EG CT  G  +++
Sbjct: 43  LLNNYFKCLMDEGRCTAEGNELKR 66


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 160 DSDLQLERINVYYNEATGGKYV 225
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 15  LLEKCFYSI*NEGNCTHTGRSMRQ 86
           LL   F  + +EG CT  G  +++
Sbjct: 43  LLNNYFKCLMDEGRCTAEGNELKR 66


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 15  LLEKCFYSI*NEGNCTHTGRSMRQ 86
           LL   F  + +EG CT  G  +++
Sbjct: 43  LLNNYFKCLMDEGRCTAEGNELKR 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,999
Number of Sequences: 438
Number of extensions: 3225
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)