Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0624
         (273 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   0.58 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       20   5.4  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    20   5.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   5.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    19   9.5  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    19   9.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    19   9.5  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    19   9.5  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 0.58
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 111 RTXSLLQLSRSHWSSGLSPSRRQRPA 188
           R  S + L  S+W   LSP  RQ  A
Sbjct: 389 RYMSTIDLRSSYWQIPLSPESRQYTA 414


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 92  MRSSCRFHINLIKYKCEN*CIKXKY 18
           + S  + H N+ +Y C +     KY
Sbjct: 274 LNSHMKSHSNVYRYSCRDCSYATKY 298


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -2

Query: 92  MRSSCRFHINLIKYKCEN*CIKXKY 18
           + S  + H N+ +Y C +     KY
Sbjct: 32  LNSHMKSHSNVYRYSCRDCSYATKY 56


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 5.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 203  PPRATCGTLTS 171
            P +ATC TLT+
Sbjct: 1104 PDKATCTTLTA 1114


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 218 KRWSSPPRA 192
           + WSSPP A
Sbjct: 123 REWSSPPDA 131


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 136 ESCRSDXVRXQXQXRCGVLADSILI*SN 53
           ++C S+ +  +   R  V  DSIL  +N
Sbjct: 392 KACSSEVMMFRMARRYDVQTDSILFVNN 419


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 191 TCGTLTSAW 165
           TCG + SAW
Sbjct: 70  TCGEVFSAW 78


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 9.5
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 218 KRWSSPPRA 192
           + WSSPP A
Sbjct: 279 REWSSPPDA 287


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,411
Number of Sequences: 336
Number of extensions: 644
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4471194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)