Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0624
(273 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 0.83
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 26 0.83
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 26 1.1
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 1.9
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 24 4.4
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 24 4.4
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 24 4.4
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb... 23 7.8
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 23 7.8
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 23 7.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 0.83
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +2
Query: 86 SASSLXLXAXXVASTAFAISLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVS 247
S+SS A +S++ IS + S PTSTS T+ S +S SS + +S
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308
Score = 24.6 bits (51), Expect = 2.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 125 STAFAISLVXWAVSKPTSTSRTLLSVVNSISS 220
ST+ IS + S PTSTS T+ S +S SS
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 0.83
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 86 SASSLXLXAXXVASTAFAISLVXWAVSKPTSTS 184
S S+ + +A+T+F SLV A + P+STS
Sbjct: 463 SVSATPTVSMSIAATSFGSSLVLTASASPSSTS 495
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 1.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 261 SCKPTETTSTNVSREEMEFTTESNVRDVDVGLETAQXTNEIAKAVE 124
S + TET + E + + V++ D +ET Q ++ + KAVE
Sbjct: 3 SVQSTETIQKVLENEGDQQFDKEVVQNSDSNIETGQISDSLTKAVE 48
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 1.9
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 186 RDVDVGLETAQXTNEIAKAVEATXXAXNXXDDAEFLPI 73
RDVD+ LET + ++ E N +D +++ I
Sbjct: 379 RDVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 23.8 bits (49), Expect = 4.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 183 PARCSRW*TPSLHDLHS*RSSQW 251
P S W P+LHDL S R S W
Sbjct: 284 PLYSSSW-IPTLHDLVSTRCSVW 305
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 23.8 bits (49), Expect = 4.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 150 SSGLSPSRRQRPARCSRW*TPSLHDLHS*RSSQ 248
SS +SPS + R R T L+D HS R+ Q
Sbjct: 52 SSSISPSSSAKDPREQRKRTFPLNDTHSSRARQ 84
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 23.8 bits (49), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 202 GELHLFTTYIRRGRLSGLATGLLL 273
GEL ++R +LSG TG+LL
Sbjct: 590 GELLYPKVFVREEKLSGKITGMLL 613
>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 23.0 bits (47), Expect = 7.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 46 HLYLIKLIWNRQELRI 93
H Y+ + +WN Q L I
Sbjct: 168 HSYMFQFVWNHQALAI 183
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 270 QEASCKPTETTSTNVSREEMEFTTE 196
+EA+ KP+ T +SR E TT+
Sbjct: 130 KEAAAKPSRTLYNAISRAASEATTK 154
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/43 (20%), Positives = 24/43 (55%)
Frame = +2
Query: 143 SLVXWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGLQLASC 271
S++ W + T +T L+ + +++++ F+E+ + +A C
Sbjct: 122 SMILWGSA---GTGKTTLARLIAVTTKSRFIEISATSTTVADC 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 857,747
Number of Sequences: 5004
Number of extensions: 11759
Number of successful extensions: 46
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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