Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0624
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1129 - 24513568-24514296,24515380-24515817                       29   0.67 
11_01_0493 + 3802223-3803061,3803816-3804014                           26   3.6  
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101...    26   4.7  
07_01_0777 + 6004370-6004559,6005089-6005207,6005411-6005538,600...    25   6.3  

>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 150 SSGLSPSRRQRPARCSRW*TPS 215
           +S +SP   QR A CSRW  PS
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPS 280


>11_01_0493 + 3802223-3803061,3803816-3804014
          Length = 345

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 115 RGRFYSFRDLIGXLGCLQAD-VNVPHVALGGELHLFTTYIRRGRLSGLA 258
           RG F S   +   + CL A  + VP +A G  LHLF  +I    L G+A
Sbjct: 210 RGSFISGDTMWIVMACLGASWLIVPAIA-GAALHLFVAFIYGHWLFGIA 257


>08_02_1462 +
           27308792-27308924,27309711-27309778,27309854-27310159,
           27310168-27310839
          Length = 392

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 219 EEMEFTTESNVRDVDVGLETAQXTNEIAKAVEAT 118
           EE+E    +   D+DV L+ A  +  +A A+EAT
Sbjct: 270 EEVERIRAAMGGDIDVSLDCAGFSKTVATALEAT 303


>07_01_0777 +
           6004370-6004559,6005089-6005207,6005411-6005538,
           6005645-6005749,6007156-6008650
          Length = 678

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 130 SFRDLIGXLGCLQADVNVPHVALGGELHLFTTYIRR 237
           S R+++G L  +Q   +   +  GG +HL TTY+ R
Sbjct: 440 SAREILGKLK-VQIQSHDSPIIPGGSVHLVTTYLMR 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,847,345
Number of Sequences: 37544
Number of extensions: 85340
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)