Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0624
         (273 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.1  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.1  
SB_50907| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=7.6)             26   5.4  

>SB_55491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 120 SLLQLSRSHWSSGLSPSRRQRPARCSRW*TPSLHDLHS 233
           SL +LS +    G+ P   + P    +W     HD HS
Sbjct: 3   SLEELSTNFAPPGIGPQATRAPYNSKQWSRTDQHDFHS 40


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 267 EASCKPTETTSTNVSREEMEFTTESNVRDVDVGLETAQ 154
           EA  + T+T S     EE E T E  + D D   E A+
Sbjct: 566 EAEEEETQTESPTEKVEEAEATAEVPIEDADTSTEEAE 603


>SB_50907| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=7.6)
          Length = 94

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 255 KPTETTSTNVSREEMEFTTESNVRDVDVGLETAQ 154
           KP +  +T++ +E  +F  + +  DVDV  ++A+
Sbjct: 43  KPNQNGTTDMLQENKDFVNQFSALDVDVHKQSAK 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,565,451
Number of Sequences: 59808
Number of extensions: 92197
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 16,821,457
effective HSP length: 67
effective length of database: 12,814,321
effective search space used: 294729383
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)