Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0624
         (273 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12200.1 68416.m01521 protein kinase family protein contains ...    27   1.3  
At4g06526.1 68417.m00938 hypothetical protein                          27   1.8  
At4g00820.1 68417.m00113 calmodulin-binding protein-related cont...    26   3.1  
At5g66190.1 68418.m08338 ferredoxin--NADP(+) reductase, putative...    25   5.4  
At5g49525.1 68418.m06129 expressed protein                             25   5.4  
At5g23060.1 68418.m02696 expressed protein                             25   5.4  
At1g50660.1 68414.m05696 expressed protein similar to liver stag...    25   7.2  
At5g26760.2 68418.m03189 expressed protein                             25   9.5  
At2g39940.1 68415.m04908 coronatine-insensitive 1 / COI1 (FBL2) ...    25   9.5  
At1g69800.1 68414.m08031 CBS domain-containing protein low simil...    25   9.5  

>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -1

Query: 249 TETTST-NVSREEME--FTTESNVRDVDVGLETAQ 154
           TET +  N   +E E  F+ ES +RDVDVG+ +AQ
Sbjct: 395 TETPAEENALPKETENIFSEESQLRDVDVGVVSAQ 429


>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 114 TXSLLQLSRSHWSSGLSPSRRQRPARCSRW*TPSLH 221
           T   L+L+RS W  G++P    R A  S W     H
Sbjct: 434 TRGALRLNRSLWGGGVTPVATCRQALLSGWLYEKFH 469


>At4g00820.1 68417.m00113 calmodulin-binding protein-related
           contains Pfam profile PF00612: IQ calmodulin-binding
           motif
          Length = 534

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 132 LSRSHWSSGLSPSRRQRPARCSR 200
           L+R +  +G SPSR QRP+  SR
Sbjct: 333 LTRGNSRTGASPSRSQRPSSPSR 355


>At5g66190.1 68418.m08338 ferredoxin--NADP(+) reductase, putative /
           adrenodoxin reductase, putative strong similarity to
           Ferredoxin--NADP reductase, chloroplast precursor (EC
           1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
           {Mesembryanthemum crystallinum} SP|P41343, {Spinacia
           oleracea} SP|P00455; identical to  cDNA ferredoxin-NADP+
           reductase precursor (petH) GI:5730138
          Length = 360

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +2

Query: 158 AVSKPTSTSRTLLSVVNSISSRLTFVEVVSV 250
           AVS P+S S +LL+ ++S+S +  F++  +V
Sbjct: 8   AVSLPSSKSSSLLTKISSVSPQRIFLKKSTV 38


>At5g49525.1 68418.m06129 expressed protein
          Length = 80

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 195 SRW*TPSLHDLHS*RSSQWACNWP 266
           SRW   +L DL S  SS WA  WP
Sbjct: 4   SRW---TLMDLPSYLSSSWAFRWP 24


>At5g23060.1 68418.m02696 expressed protein
          Length = 387

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 122 ASTAFAISLVXWAVSKPTSTSRTLLSVVNS 211
           +ST   +SL   +VS PTSTS +LLS+  S
Sbjct: 21  SSTKKTLSLRQVSVSLPTSTSISLLSLFAS 50


>At1g50660.1 68414.m05696 expressed protein similar to liver stage
           antigen-1 (GI:510184) [Plasmodium falciparum]; similar
           to Myosin II heavy chain, non muscle (Swiss-Prot:P08799)
           [Dictyostelium discoideum]; similar to liver stage
           antigen (GI:9916) [Plasmodium falciparum]; similar to
           Kinesin-like protein KLPA (Swiss-Prot:P28739)
           [Emericella nidulans]
          Length = 725

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 109 SXRGRFYSFRDLIGXLGCLQADVNVPHVALGG 204
           S +G F    DL+G         N PHV  GG
Sbjct: 654 SSKGGFSPMMDLVGQWNSSPESANHPHVNRGG 685


>At5g26760.2 68418.m03189 expressed protein
          Length = 735

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 243 TTSTNVSREEMEFTTESNVRDVDVGLETAQXTNEIAKAVEA 121
           TT +N  + EM+FT+   + DV+   +    T + +  VE+
Sbjct: 193 TTQSNQEKHEMDFTSTVIMPDVNSVSKLPPQTKQASTVVES 233


>At2g39940.1 68415.m04908 coronatine-insensitive 1 / COI1 (FBL2) E3
           ubiquitin ligase SCF complex F-box subunit; identical to
           LRR-containing F-box protein GI:3158394 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 123 LLQLSRSHWSSGLSPSRR 176
           L+Q++R +W+  L PSRR
Sbjct: 532 LMQMARPYWNIELIPSRR 549


>At1g69800.1 68414.m08031 CBS domain-containing protein low
           similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
           sapiens}; contains Pfam profile PF00571: CBS domain
          Length = 447

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 155 WAVSKPTSTSRTLLSVVNSISS-RLTFVEVVSVG 253
           WA   P ST  ++LSV+  +S  RL  V V+  G
Sbjct: 217 WAPFLPVSTESSMLSVMLLLSKYRLRNVPVIKTG 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,567,570
Number of Sequences: 28952
Number of extensions: 64006
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 222240128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)