Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0623
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    24   0.76 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   7.1  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   9.4  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   9.4  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 322 GEFFRLLAGERDGETLFFVCT 260
           GE+FRL+AGE D       CT
Sbjct: 46  GEWFRLVAGEGDNCRDVIQCT 66


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 316 TPLEQGRYLLRILLKNRP 369
           +PLE    L+  +LKN P
Sbjct: 43  SPLESNHKLVTFILKNPP 60


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +2

Query: 308 SKKLPSSKXGISCASC*KIAQPKNSNKKVA*PENPNQFF 424
           S+ L S     S  S  + A   N+N K +   NP Q +
Sbjct: 163 SQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIY 201


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 88  FFSN*SMVKEFIATAGNEYIR 150
           FF N       IAT  NE+IR
Sbjct: 128 FFVNEKQSYFHIATTSNEFIR 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,393
Number of Sequences: 336
Number of extensions: 1841
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)