Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0623
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   3.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   4.1  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   7.1  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   9.4  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    24   9.4  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 363 SPNQRTPTRKSPSRKTPTNFSA 428
           SP   TPT+ SP  K+P +  A
Sbjct: 14  SPAMETPTKASPDSKSPNSVGA 35


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSR 404
           SP H   +SP+ R P   SPSR
Sbjct: 73  SPHHGPVRSPSSRKPLPASPSR 94


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 360 KSPNQRTPTRKSPSRKTPTN 419
           K+P +   T+ +PSR  PTN
Sbjct: 27  KAPKKGAKTKSTPSRPKPTN 46


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPAR 446
           +PA P KK+P+   P R S + ++  +      P R
Sbjct: 42  TPAKPVKKAPSVVQPRRVSRTLRSSESVHTNHGPER 77


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1125

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 354  AKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 449
            A    NQ+   + S     PT+FSA  SP R+
Sbjct: 957  ADSKMNQQLSGKDSTDVHLPTDFSASSSPLRS 988


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 370 LGDFLAGCAGDTXLARGEFFRLLAGERDGETLFFVC 263
           L D+ A  A +   A+G+FF ++  E D +  + VC
Sbjct: 32  LYDYTARKATEVSFAKGDFFHVIGREND-KAWYEVC 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,685,528
Number of Sequences: 5004
Number of extensions: 31332
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)