Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0623
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0003 - 21417119-21417421,21418019-21418599,21418781-21419075 29 1.3
05_05_0392 + 24629528-24630442 29 1.7
03_04_0029 - 16610182-16611753 29 1.7
05_05_0004 - 21422483-21422785,21423354-21423938,21424746-214248... 29 2.3
03_01_0015 + 126611-126639,126718-127099 28 4.0
02_05_0814 - 31970558-31971126,31971242-31971413 27 5.3
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310... 27 5.3
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 27 7.0
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 27 7.0
05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718 27 7.0
01_06_0922 - 33022709-33023545 27 7.0
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 9.2
03_05_1053 - 29987908-29987985,29988096-29988152,29988229-299883... 27 9.2
02_04_0056 + 19313422-19313967,19314035-19314168,19314263-193143... 27 9.2
>05_05_0003 - 21417119-21417421,21418019-21418599,21418781-21419075
Length = 392
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 278 SFLCLHRTVSRTLNLILPLRVDIL*YYP 195
S CLH T+ LNL PL D + YYP
Sbjct: 338 SAYCLHATLEGVLNLQAPLLDDPIAYYP 365
>05_05_0392 + 24629528-24630442
Length = 304
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 449
SP P ++ P +R PTR+SPS T R++ A A
Sbjct: 174 SPPPPPRREPGER-PTRRSPSPATKRPPDQRRTAASA 209
>03_04_0029 - 16610182-16611753
Length = 523
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA 443
S A PA SP+ +P SPS ++ RKSPA
Sbjct: 70 STAAPAAASPSIASPAASSPSDVPSSSSKKRKSPA 104
>05_05_0004 -
21422483-21422785,21423354-21423938,21424746-21424849,
21425467-21425767
Length = 430
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1
Query: 278 SFLCLHRTVSRTLNLILPLRVDIL*YYP 195
S CLH T+ LNL PL D L +YP
Sbjct: 376 SAYCLHATLEGVLNLQAPLLDDPLGFYP 403
>03_01_0015 + 126611-126639,126718-127099
Length = 136
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 FFRLLAGERDGETLFFVCTGLSPEH 242
FF+ A +G TLFFVC L+ H
Sbjct: 108 FFQATARGEEGMTLFFVCCNLTCAH 132
>02_05_0814 - 31970558-31971126,31971242-31971413
Length = 246
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTP 413
SP+ P +PN TPT +P TP
Sbjct: 146 SPSSPTPTTPNPSTPTPTTPYPSTP 170
>01_01_0412 -
3099509-3099634,3099758-3099904,3099991-3100089,
3100171-3100602,3101121-3101599,3101683-3101728
Length = 442
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 252 LPNTQSNSTTTSRHTVILPEYH*FVLKLTSEP 157
LP+ S+S+T H VI+P Y TS P
Sbjct: 239 LPSVASSSSTAIPHEVIIPSYQPATSATTSTP 270
>09_06_0204 -
21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 313 KTPLEQGRYLLRILLKNRPTKELQQESRLAG 405
K P ++GR + ++KNR TK+ QES G
Sbjct: 607 KAPPKKGRGGAKQIVKNRVTKDSSQESAKGG 637
>05_06_0046 -
25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 342 PAHPAKKSPNQRTPTRKSPSRKT 410
P H + K PN+ + +K P RKT
Sbjct: 720 PLHRSTKLPNENSEQQKQPKRKT 742
>05_05_0134 + 22619297-22619801,22619879-22621960,22622067-22623718
Length = 1412
Score = 27.1 bits (57), Expect = 7.0
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 271 RKEFRRLVLP-PEVEKTPLEQGRYLLRILLKNRPTKELQQES 393
+K +R V+P PEVE T Q Y + L N P +L++ S
Sbjct: 666 KKGRKRKVMPSPEVETTDHMQDSYWSGLSLHNHPIHDLRRAS 707
>01_06_0922 - 33022709-33023545
Length = 278
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPAR 446
SP+ AK++P QR +PS + R SP R
Sbjct: 182 SPSPAAKRTPEQRRAASPAPSLQRKPPVPVRPSPRR 217
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 26.6 bits (56), Expect = 9.2
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTP--TRKSPSRKTPT--NFSARKSPARA 449
SPA P +SP +R+P T S ++P N S R+SP R+
Sbjct: 249 SPA-PRSRSPRRRSPVKTTSSHRERSPVRRNGSPRRSPVRS 288
>03_05_1053 -
29987908-29987985,29988096-29988152,29988229-29988344,
29988900-29989038,29989430-29989558,29990218-29990325,
29990418-29990645
Length = 284
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 449
SP P +PN R + + P+R+ P SA S A A
Sbjct: 10 SPFLPPLSTPNPRALSLRLPARRLPVASSAAPSGAAA 46
>02_04_0056 +
19313422-19313967,19314035-19314168,19314263-19314398,
19314870-19314923,19314995-19315135,19315220-19315546,
19315647-19315916,19316080-19316226,19316890-19317045,
19317223-19317290,19318210-19318309,19318696-19318985,
19319074-19319274,19319840-19319902,19320263-19320356,
19320964-19321035,19321979-19322077,19322254-19322376
Length = 1006
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 342 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 449
P+ SP PT+ P PT AR PA A
Sbjct: 58 PSPSPSPSPPAGKPTKPHPESTPPTKTPARSKPAAA 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,488,825
Number of Sequences: 37544
Number of extensions: 193708
Number of successful extensions: 598
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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