Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0623
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    29   1.6  
AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF077542-6|AAC26298.1|  108|Caenorhabditis elegans Hypothetical ...    28   3.6  
AC017117-9|AAF16612.1|  169|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical ...    27   4.8  
AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical...    27   6.3  
AL033508-4|CAE45091.1|  430|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.     27   8.3  
AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated...    27   8.3  
AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated...    27   8.3  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    27   8.3  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    27   8.3  

>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 342 PAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPAR 446
           P  P KK   +  PT  SP + TPT+    ++ AR
Sbjct: 214 PLVPEKKPKIEDAPTTSSPKKSTPTSAPPTRASAR 248


>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA 443
           S   P +  P    PTR++PS K P     R++P+
Sbjct: 234 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPS 268


>AC024136-6|AAF35965.3|  425|Caenorhabditis elegans Hypothetical
           protein F54A3.1 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA 443
           S   P +  P    PTR++PS K P     R++P+
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRAPS 272


>Z50756-4|CAA90639.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 440
           S  H A  S +Q TPT+ +PS+ TP + S  ++P
Sbjct: 88  SQTHQA--SVSQTTPTQTTPSQYTPASVSTARAP 119


>Z50741-5|CAA90612.1|  482|Caenorhabditis elegans Hypothetical
           protein T08D10.1 protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 440
           S  H A  S +Q TPT+ +PS+ TP + S  ++P
Sbjct: 88  SQTHQA--SVSQTTPTQTTPSQYTPASVSTARAP 119


>AF077542-6|AAC26298.1|  108|Caenorhabditis elegans Hypothetical
           protein Y57G7A.3a protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 348 HPAKKSPNQRTPTRKSPSRKTPTNFSARKS 437
           +P KKS  Q  PT ++P  KTP   S  ++
Sbjct: 52  NPIKKSSTQTCPTAQTPPAKTPIERSRHEA 81


>AC017117-9|AAF16612.1|  169|Caenorhabditis elegans Hypothetical
           protein F43C11.2 protein.
          Length = 169

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 349 CAGDTXLARGEFFRLLAGERDGETLFFVCTGLSP 248
           C   T L   EF  LL  E+DG T+F    GL P
Sbjct: 48  CGNLTSLFDYEFLTLLTSEQDGCTVFSCPRGLRP 81


>Z73970-3|CAA98242.2|  773|Caenorhabditis elegans Hypothetical
           protein C29A12.3a protein.
          Length = 773

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 336 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARK 434
           VSP    KK P + +P  KSP + +P    A K
Sbjct: 676 VSPKKFEKKPPVKSSPVNKSPVKSSPIKKEAEK 708


>AF067211-4|AAC16995.1|  532|Caenorhabditis elegans Hypothetical
           protein B0205.9 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +1

Query: 289 LVLPPEVEKTPLEQGRYL 342
           L +PPE+E+TP+++G ++
Sbjct: 377 LPIPPEIEETPVQEGHHV 394


>AL161712-12|CAC70144.1|  789|Caenorhabditis elegans Hypothetical
           protein Y66D12A.15 protein.
          Length = 789

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 205 YSMSTRSGRIRLSVRETVRCRQRKEFRRLVLPPEVEKTPLEQGRYLLRIL 354
           YSM   SGR  L   E ++  +++E+  L+L  EV   P +  R +L I+
Sbjct: 423 YSMVAYSGRRTLQAEEAMKFIEKQEWGLLLL-DEVHTIPAKMFRRVLTIV 471


>AL033508-4|CAE45091.1|  430|Caenorhabditis elegans Hypothetical
           protein Y106G6G.6 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 252 LPNTQSNSTTTSRHTVILPEYH*FVLKLTSEPHATNIFVTRR 127
           L N++ +S  +S    +LP  +  +L L S PH  N  +  R
Sbjct: 251 LQNSEDSSEVSSAALRLLPNIYSLILYLYSTPHVPNYHLLHR 292


>Z81135-4|CAB03457.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 449
           +PA P    P  +   + +P+ K+P +  AR+S  RA
Sbjct: 48  TPARPTVAKPAPKPTPKSAPAPKSPKSPPARRSIPRA 84


>AY714779-1|AAU14146.1| 1338|Caenorhabditis elegans UNC-89 protein.
          Length = 1338

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 363 SPNQRTPTRKSPSRKTPTNFSARK 434
           SPN ++P R +P  K+P   S R+
Sbjct: 637 SPNPKSPRRSTPGTKSPVVLSPRQ 660


>AL032634-4|CAA21599.1|  500|Caenorhabditis elegans Hypothetical
           protein W01G7.5 protein.
          Length = 500

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPARA 449
           +PA P    P  +   + +P+ K+P +  AR+S  RA
Sbjct: 48  TPARPTVAKPAPKPTPKSAPAPKSPKSPPARRSIPRA 84


>AF003131-8|AAP68959.1| 1393|Caenorhabditis elegans Uncoordinated
           protein 89, isoform c protein.
          Length = 1393

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 363 SPNQRTPTRKSPSRKTPTNFSARK 434
           SPN ++P R +P  K+P   S R+
Sbjct: 601 SPNPKSPRRSTPGTKSPVVLSPRQ 624


>AF003131-7|AAV34798.1| 1396|Caenorhabditis elegans Uncoordinated
           protein 89, isoform d protein.
          Length = 1396

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 363 SPNQRTPTRKSPSRKTPTNFSARK 434
           SPN ++P R +P  K+P   S R+
Sbjct: 604 SPNPKSPRRSTPGTKSPVVLSPRQ 627


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 363  SPNQRTPTRKSPSRKTPTNFSARK 434
            SPN ++P R +P  K+P   S R+
Sbjct: 6649 SPNPKSPRRSTPGTKSPVVLSPRQ 6672


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 363  SPNQRTPTRKSPSRKTPTNFSARK 434
            SPN ++P R +P  K+P   S R+
Sbjct: 7289 SPNPKSPRRSTPGTKSPVVLSPRQ 7312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,306,456
Number of Sequences: 27780
Number of extensions: 177040
Number of successful extensions: 728
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)