Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0623
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   2.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   2.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 349 ILLKNRPTKELQQESRLAGKPQPI 420
           IL  +RP+ + ++E++ + KP P+
Sbjct: 343 ILRMSRPSDKEEREAQKSQKPSPV 366


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 300 RENETAKLFSLSAPDCLPNTQSNSTTTSR 214
           RENE   L SL +  CL  T S     +R
Sbjct: 181 RENELRALSSLFSKGCLVGTWSPDPAINR 209


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 300 RENETAKLFSLSAPDCLPNTQSNSTTTSR 214
           RENE   L SL +  CL  T S     +R
Sbjct: 181 RENELRALSSLFSKGCLVGTWSPDPAINR 209


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 300 RENETAKLFSLSAPDCLPNTQSNSTTTSR 214
           RENE   L SL +  CL  T S     +R
Sbjct: 181 RENELRALSSLFSKGCLVGTWSPDPAINR 209


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 447 HEQETCEQKNWLGFSG*ATFL 385
           H +E   Q N +GF G  TFL
Sbjct: 867 HLRELYLQNNLIGFIGNLTFL 887


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 412 GVFRLGDFLVGVLWLGDFLAGC 347
           G+ R+G+  +  L + D   GC
Sbjct: 55  GLRRIGNLFLASLAIADLFVGC 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,109
Number of Sequences: 438
Number of extensions: 2182
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)