Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0623
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 29 1.1
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 29 1.1
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 29 1.9
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 29 1.9
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 28 2.5
At3g28790.1 68416.m03593 expressed protein 28 3.4
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ... 27 4.4
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 27 4.4
At5g60740.1 68418.m07621 ABC transporter family protein similar ... 27 5.9
At3g20700.1 68416.m02619 F-box family protein-related contains T... 27 5.9
At1g79960.1 68414.m09346 ovate protein-related contains TIGRFAM ... 27 5.9
At5g19370.1 68418.m02308 rhodanese-like domain-containing protei... 27 7.7
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 345 AHPAKKSPNQRTPTRKSPSRK-TPTNFSARKSPA 443
A PA++SP +P + SP+R+ +P S +SP+
Sbjct: 214 ASPARRSPRSSSPQKTSPAREVSPDKRSNERSPS 247
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 345 AHPAKKSPNQRTPTRKSPSRK-TPTNFSARKSPA 443
A PA++SP +P + SP+R+ +P S +SP+
Sbjct: 214 ASPARRSPRSSSPQKTSPAREVSPDKRSNERSPS 247
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 440
SP+ P+ SP TPT +PS TPT + +P
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSH-TPTPHTPSHTP 98
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSP 440
SP+ P+ SP TPT +PS TPT + +P
Sbjct: 66 SPSTPSHPSPPSHTPTPSTPSH-TPTPHTPSHTP 98
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 28.3 bits (60), Expect = 2.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 336 VSPAHPAKKSPNQRTPTRKSPSRKTPTNFSARKSPA 443
+SP+H SP +P+ KSPS P + S SPA
Sbjct: 194 LSPSHATSHSPATPSPSPKSPS---PVSHSPSHSPA 226
>At3g28790.1 68416.m03593 expressed protein
Length = 608
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 339 SPAHPAKKSPNQRTPTRKSPSRKTPT-NFSARKSPA 443
+P+ P +P TPT +P+ TPT + A +PA
Sbjct: 282 TPSTPTPSTPTPSTPTPSTPTPSTPTPSTPAPSTPA 317
>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
PF03715: Uncharacterised protein family (UPF0120)
Length = 779
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +1
Query: 229 RIRLSVRETVRCRQRKEFRRLVLPPEVEKTPLEQGRYLLRILLKNRPTKELQQESRLAGK 408
R+R + T R RKE ++L+ E + + R L++ L + + ++ + AGK
Sbjct: 550 RLRSFCKSTKAERFRKEMKQLISQIEANSEFVNKKRALIKFLPNDLAAESFLEDEKKAGK 609
Query: 409 PQPIFLLASLL 441
P+ A ++
Sbjct: 610 -TPLLQYAEII 619
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 193 LG*YYSMSTRSGRIRLSVRETVRCRQRKEFRRLVLPPEVEKTPLEQGRYLL 345
+G YS+ R ++VR+ + R+ ++LV PE K P+E + LL
Sbjct: 287 MGRMYSLFRRVANGLVTVRDVMTLHLREMGKQLVTDPEKSKDPVEFVQRLL 337
>At5g60740.1 68418.m07621 ABC transporter family protein similar to
ATP-binding cassette, sub-family G, member 2
(Placenta-specific ATP- binding cassette transporter)
(Breast cancer resistance protein) SP:Q9UNQ0 from [Homo
sapiens]
Length = 1061
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 251 RQSGADKEKSFAVSFSRQKSKKLPSSKXGISCA 349
++ + ++SF+ +FSR+KS K P G+S A
Sbjct: 353 KKHATELQQSFSRTFSRRKSMKQPDLMRGLSQA 385
>At3g20700.1 68416.m02619 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 326
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +2
Query: 266 DKEKSFAVSFSRQKSKKLPSSKXGISCASC*KIAQPKNSNKKVA*PENPNQFFCSQVSC 442
DKEK FAV F + K+K K A + ++V E+PN+ C VSC
Sbjct: 265 DKEKKFAVVFDKDKAK---GFKTNYDIA---YVIGENGYYRRVDLRESPNKPLCRIVSC 317
>At1g79960.1 68414.m09346 ovate protein-related contains TIGRFAM
TIGR01568 : uncharacterized plant-specific domain
TIGR01568
Length = 294
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 252 LPNTQSNSTTTSRHTVILPEYH*FVLKLTSEP 157
+ T ++S SR T++LPE VL+ T EP
Sbjct: 171 METTSTSSERQSRSTLVLPENCIAVLRYTDEP 202
>At5g19370.1 68418.m02308 rhodanese-like domain-containing protein /
PPIC-type PPIASE domain-containing protein low
similarity to MPT-synthase sulfurylase [Synechococcus
sp. PCC 7942] GI:2950364; contains Pfam profiles
PF00581: Rhodanese-like domain, PF00639: PPIC-type
PPIASE domain; identical to cDNA peptidyl-prolyl
cis-trans isomerase GI:2246379
Length = 299
Score = 26.6 bits (56), Expect = 7.7
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 304 EVEKTPLEQGRYLLRILLKNRPTKELQQESRLAGKPQPIFL 426
+V + + G +LL++L + P K++Q E + P+F+
Sbjct: 166 QVVRCRTQFGLHLLQVLSEREPVKDIQVEELHSKMQDPVFM 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,655,392
Number of Sequences: 28952
Number of extensions: 160519
Number of successful extensions: 556
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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