Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0622
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    27   2.4  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    27   3.1  
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   4.2  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.3  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    25   9.6  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   9.6  

>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 233 CRGSRPWPSIKSD--KDKFQVNLDVQHFAPEEISVK 334
           CRGS PW  +++D  + K+Q   D +   P E+  K
Sbjct: 208 CRGSLPWQGLQADTKEQKYQRIRDTKIGTPLEVLCK 243


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 516 WRHFLGAITDNTPSEDSRDSTDSAVQPSGK 427
           W H  G IT+N  ++D+++   S V    K
Sbjct: 128 WSHIPGMITENQTNDDAKEVNGSDVDEKSK 157


>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 233 CRGSRPWPSIK--SDKDKFQVNLDVQHFAPEEI 325
           CRGS PW  +K  + K K++  ++ +   P E+
Sbjct: 209 CRGSLPWQGLKATTKKQKYEKIMEKKISTPTEV 241


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 330 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 434
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 586 IGPSPPCARVRFGRSESCVHPPLLAALPG 500
           +G SPP     + RSE  V+ PLL    G
Sbjct: 273 VGVSPPAGNFVYKRSEENVNRPLLCFAGG 301


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 475 RWCVVCNRTQEVPPAVE 525
           R+C++CN   ++ PA++
Sbjct: 152 RFCIICNYINKISPAIQ 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,530
Number of Sequences: 5004
Number of extensions: 52275
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)