Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0622
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    42   3e-04
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    41   6e-04
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    38   0.008
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H...    37   0.014
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    37   0.014
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    34   0.072
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    29   2.7  
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    29   3.6  
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa...    28   6.3  
At1g34180.1 68414.m04239 no apical meristem (NAM) family protein...    27   8.3  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
 Frame = +2

Query: 296 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
           D+     EE+ V+  DG I+ + G+    +EEK D+   + R   +FTRR+ LPE    E
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125

Query: 452 SVESRLSSDGVLSVIAPR 505
            +++ +  +GVLSV  P+
Sbjct: 126 EIKASM-ENGVLSVTVPK 142


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +2

Query: 296 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
           DV     EE+ V+  DG I+ + G+    +EEK D    + R   +F RR+ LPE    E
Sbjct: 65  DVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVE 124

Query: 452 SVESRLSSDGVLSVIAPR 505
            V++ +  +GVLSV  P+
Sbjct: 125 EVKASM-ENGVLSVTVPK 141


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
 Frame = +2

Query: 185 PAPL*AENTTARGSPCCRGSR-PWPSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIV-V 358
           P+   A  +TAR       +R  W   K   +      D+     EE+ V+  D  ++ +
Sbjct: 33  PSSALANASTARDVAAFTNARVDW---KETPEAHVFKADLPGLKKEEVKVEVEDKNVLQI 89

Query: 359 EGK----HEEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 505
            G+    +EEK D+   + R   +F RR+ LPE    E V++ +  +GVL+V+ P+
Sbjct: 90  SGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVPK 144


>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
           (HSP22.0-ER) identical to endomembrane-localized small
           heat shock protein GI:511795 from [Arabidopsis thaliana]
          Length = 195

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
 Frame = +2

Query: 170 FSVLQPAPL*AENTTARGSPCCRGSRPWPSIKSDKDKFQVNLDVQHFAPEEISVKTAD-G 346
           F +L+  PL  E  T+      R    W   K   +  ++ LD+     +E+ ++  + G
Sbjct: 50  FKILERIPLGLERDTSVALSPARVD--W---KETAEGHEIMLDIPGLKKDEVKIEVEENG 104

Query: 347 YIVVEG---KHEEKK-DQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSV 493
            + V G   + EEKK DQ   + R   +F R++ LP+    ESV+++L  +GVL++
Sbjct: 105 VLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKL-ENGVLTI 159


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +2

Query: 296 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPEGCTAE 451
           D+     EE+ V+   D  + + G +H EK+D++    R      QFTRR+ LPE    +
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query: 452 SVESRLSSDGVLSVIAPR 505
            V++ +  +GVL+V  P+
Sbjct: 122 QVKAAM-ENGVLTVTVPK 138


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +2

Query: 296 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 451
           D+     EE+ V+  D  ++ + G+     EEK+D    + R   QF+R++ LPE    +
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 452 SVESRLSSDGVLSVIAPR 505
            V++ +  +GVL+V  P+
Sbjct: 124 QVKASM-ENGVLTVTVPK 140


>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 482 HHLKTAGTPQIQPYSLPAKRSDE*IDAICNHADLSSPRVCLQPRCSRP 339
           HHL  +   ++ P SLP   S      +  H   SS      PRCS+P
Sbjct: 26  HHLALSSKARVFPLSLPCNFSSRVSFKLQLHCAASSSSSVSPPRCSKP 73


>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -2

Query: 461 TPQIQPYSLPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 291
           T  I+ YS  A      I    N A L  P+    PR   S PPF    LPG+NAG  G
Sbjct: 14  TVLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = +2

Query: 317 EEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSD 478
           +EI     D Y   EG  EE+  ++    R     + L E C  E+VES    D
Sbjct: 48  DEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDDD 101


>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
           family protein contains Pfam domain PF00149: Ser/Thr
           protein phosphatase
          Length = 474

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +2

Query: 218 RGSPCCRGSRPWPSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 397
           +G PC   S P   I+   + +Q   D      E ++ K     +V+EG HE +    G 
Sbjct: 240 KGVPCFSCSFPDAPIR---ETYQPRWDAWGRFMEPLTSKVPT--MVIEGNHEIEPQASGI 294

Query: 398 ISRQFTRRYALP 433
             + ++ R+A+P
Sbjct: 295 TFKSYSERFAVP 306


>At1g34180.1 68414.m04239 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM-like protein GI:8809651 from (Arabidopsis
           thaliana)
          Length = 564

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 356 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 505
           +E    E  D  G   RQF     +P+G +AE ++S L ++     I PR
Sbjct: 229 IEKLLNEIPDAPGVNQRQFDEFVGVPQGNSAEVIQSTLLNNSSGEYIDPR 278


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,194,807
Number of Sequences: 28952
Number of extensions: 306347
Number of successful extensions: 872
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)