Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0621
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.98 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.0  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   6.9  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   6.9  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 382 PHAIMRNMFENPGWTTQYTPYQPEVAQGR 468
           P+ ++ N + +P  +  Y PY P    GR
Sbjct: 127 PYTVISNGYSSPMSSGSYDPYSPNGKIGR 155


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 412  NPGWTTQYTPYQP 450
            NPG TT Y  +QP
Sbjct: 1359 NPGSTTNYPEWQP 1371


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 76  CHSSCYNTKY 105
           C S C++TKY
Sbjct: 85  CRSECFSTKY 94


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 653 CALQLASGDAIVRTRRTLFVCY 588
           C L L    A   +++T+F+CY
Sbjct: 289 CGLVLICDSAKSESQQTVFLCY 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,812
Number of Sequences: 336
Number of extensions: 3954
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)