Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0621
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    96   5e-21
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    27   3.2  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    27   3.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   7.5  

>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 40/74 (54%), Positives = 56/74 (75%)
 Frame = +1

Query: 286 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQG 465
           SE +       +A +N++ +S+IGMGY+N  +P AI RN+ ENP W TQYTPYQ E++QG
Sbjct: 110 SESEFTTLANNVANQNKLIKSFIGMGYYNVKLPAAIQRNVLENPEWYTQYTPYQAEISQG 169

Query: 466 RLESLLNYQTMVSD 507
           RLES++NYQTM++D
Sbjct: 170 RLESMMNYQTMIAD 183



 Score = 38.7 bits (86), Expect = 7e-04
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 122 FPDRVDFPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQS 256
           FP    F  RHIGP   D    L+ LGYK  D    D +P  +++
Sbjct: 43  FPALDTFEPRHIGPSKTDQQYQLESLGYKDFDSFLKDVIPDSVRT 87



 Score = 33.1 bits (72), Expect = 0.037
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 510 TGLDVANASLLDEGTAAAK 566
           TGL ++NASLLDEGTAA +
Sbjct: 185 TGLSISNASLLDEGTAAGE 203


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 2   LKGKLMSRSTIDGFHKTYFE-NKMLSAIRHVTTQSTRSDTLFPDR 133
           LKGK     TI G  +   E NK+L +  H+ ++ T +DT   +R
Sbjct: 102 LKGKESPFETIFGKERKEMESNKLLDSATHLQSRVTEADTKNDER 146


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 71  AFYFRNKFYENHRSYSYS 18
           AFY    FY+NHR Y+ S
Sbjct: 127 AFYRLKNFYQNHRRYTVS 144


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 641 LASGDAIVRTRRTLFVCYACD--TVKVL 564
           LA G     +RR+ F+C ACD  TV+VL
Sbjct: 618 LALGPVQEGSRRSNFMCLACDDATVRVL 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,591
Number of Sequences: 5004
Number of extensions: 63392
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)