Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0621
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0741 - 24016204-24016298,24016408-24016525,24016805-240169... 105 3e-23
01_06_0461 + 29553709-29554905,29555051-29555296,29555387-295554... 103 1e-22
04_01_0214 + 2725866-2725972,2726059-2726157,2726317-2726419 31 1.1
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 29 4.4
09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804 28 5.9
05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281 28 5.9
09_03_0113 + 12458824-12458976 28 7.7
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 28 7.7
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 28 7.7
>06_03_0741 -
24016204-24016298,24016408-24016525,24016805-24016903,
24016992-24017117,24017200-24017277,24017366-24017554,
24018186-24018338,24018785-24018898,24019576-24019761,
24019845-24019970,24020053-24020248,24020338-24020438,
24020533-24020610,24020707-24020952,24021063-24022253
Length = 1031
Score = 105 bits (252), Expect = 3e-23
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +1
Query: 286 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQG 465
+E ++IE ++ +A N ++S+IGMGY+N VP I+RN+ ENP W TQYTPYQ E+AQG
Sbjct: 122 TESEMIEHMQRLAAMNRAYKSFIGMGYYNTHVPAVILRNLMENPAWYTQYTPYQAEIAQG 181
Query: 466 RLESLLNYQTMVSD 507
RLESLLNYQTMV+D
Sbjct: 182 RLESLLNYQTMVAD 195
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 510 TGLDVANASLLDEGTAAAKHFHCVTGITNEQSSS--CXNDCIPR 635
TGL ++NASLLDE TAAA+ GI + + ++C P+
Sbjct: 197 TGLPMSNASLLDEATAAAEAMAMCNGILKSKKKTFLIASNCHPQ 240
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 563 EALSLCHR--HNKRTKFVVXERLHPQTLAVVHTR 658
EA+++C+ +K+ F++ HPQT+ V TR
Sbjct: 215 EAMAMCNGILKSKKKTFLIASNCHPQTIDVCQTR 248
>01_06_0461 +
29553709-29554905,29555051-29555296,29555387-29555464,
29555557-29555657,29555745-29555940,29556022-29556147,
29556231-29556416,29556921-29557034,29557522-29557674,
29558287-29558475,29558568-29558645,29558728-29558853,
29558942-29559040,29559315-29559432,29559531-29559625
Length = 1033
Score = 103 bits (248), Expect = 1e-22
Identities = 44/74 (59%), Positives = 59/74 (79%)
Frame = +1
Query: 286 SEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPYQPEVAQG 465
+E +I+ ++ +A N+ ++S+IGMGY+N VP I+RN+ ENP W TQYTPYQ E+AQG
Sbjct: 124 TESQMIDHMQRLAAMNKAYKSFIGMGYYNTHVPAVILRNLMENPAWYTQYTPYQAEIAQG 183
Query: 466 RLESLLNYQTMVSD 507
RLESLLNYQTMV+D
Sbjct: 184 RLESLLNYQTMVAD 197
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 510 TGLDVANASLLDEGTAAAKHFHCVTGITNEQSSS--CXNDCIPR 635
TGL ++NASLLDE TAAA+ GI + + ++C P+
Sbjct: 199 TGLPMSNASLLDEATAAAEAMAMCNGILKSKKKTFLIASNCHPQ 242
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 563 EALSLCHR--HNKRTKFVVXERLHPQTLAVVHTR 658
EA+++C+ +K+ F++ HPQT+ V TR
Sbjct: 217 EAMAMCNGILKSKKKTFLIASNCHPQTIDVCQTR 250
>04_01_0214 + 2725866-2725972,2726059-2726157,2726317-2726419
Length = 102
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 428 HNIRRISQKSHKVDLKACLITKRW 499
HN RR+S S+KV L+ LI +RW
Sbjct: 62 HNFRRMSSNSNKVILEWMLIIRRW 85
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 20 SRSTIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRV 136
+R+T+D HKTY K RH+ + DT PD V
Sbjct: 125 TRATLDALHKTYMTRKE----RHINIVPFKFDTPSPDDV 159
>09_02_0455 + 9517802-9518121,9518177-9518423,9518517-9518804
Length = 284
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +2
Query: 11 KLMSRSTIDGFHKTYFENKMLSAIRHVTTQSTR----SDTLFPDRVDFPSRHIGPRDQDI 178
K M D + +FE +L ++ H S R +D + R ++ + +++
Sbjct: 65 KKMGSGGEDRHRRIWFEWDVLMSLSHPLLPSLRGVLATDVVVGPRRWLQAKLVAAKNRHA 124
Query: 179 VTMLDLLGYKSLDQLTNDAVPKKIQS 256
T+ ++ KS +LTNDA+ ++++
Sbjct: 125 TTVAEIPPLKSTVELTNDAIVARMEA 150
>05_07_0106 + 27723877-27723978,27724825-27725100,27726103-27727281
Length = 518
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 579 HSESASQQPYPHPVRKH*QRPIQSVTNHRLVIKQA 475
H ++ QP P PV++H Q Q+V + V QA
Sbjct: 244 HRQAQPFQPAPQPVQRHTQNTPQTVVEAQQVTSQA 278
>09_03_0113 + 12458824-12458976
Length = 50
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 403 MFENPGWTTQYTPYQPEVAQGR 468
M GW TQ P QPE+ QG+
Sbjct: 13 MMRVAGWLTQQPPDQPELLQGK 34
>02_05_0366 - 28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 244 EDSIQGLMNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIM--RNMFENP 417
ED Q L+N+ + +L+ + +A + +WRS + C H +M N + P
Sbjct: 1876 EDQTQMLLNVISELPNNELLLQKHFMAVLSSVWRS------KSACESHCVMSYSNTLQKP 1929
Query: 418 G 420
G
Sbjct: 1930 G 1930
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 561 QQPYPHPVRKH*QRPIQSVTNH--RLVIKQAFKSTLCDFWLIRRI 433
+QP P R+H +P++++ +H + + + C FWL+ I
Sbjct: 1657 KQPSKAPKREHSSQPLKAILHHLEKASLPVLEEGRTCGFWLLNGI 1701
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,405,932
Number of Sequences: 37544
Number of extensions: 389630
Number of successful extensions: 807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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