Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0621
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical p...   104   5e-23
AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical p...    29   3.9  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      28   6.9  
AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like ...    28   6.9  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   6.9  

>U23510-10|AAC46780.1|  979|Caenorhabditis elegans Hypothetical
           protein R12C12.1a protein.
          Length = 979

 Score =  104 bits (250), Expect = 5e-23
 Identities = 42/81 (51%), Positives = 63/81 (77%)
 Frame = +1

Query: 265 MNISEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNMFENPGWTTQYTPY 444
           + +  P+ EY +++ +  IA +N+I+RSYIGMGY++  VP  I RN+ +N GW +QYTPY
Sbjct: 72  LELPAPLDEYKMLKELEAIAAQNKIYRSYIGMGYYDTIVPAVISRNILQNIGWISQYTPY 131

Query: 445 QPEVAQGRLESLLNYQTMVSD 507
           Q E++QGRLESLLN+QTM+++
Sbjct: 132 QAEISQGRLESLLNFQTMIAE 152



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)
 Frame = +2

Query: 140 FPSRHIGPRDQDIVTMLDLLGYKSLDQLTNDAVPKKIQSK 259
           F  RHIGPR  +   MLD +GYK LD LT   VP  I+++
Sbjct: 30  FVDRHIGPRRLEQQQMLDFIGYKDLDDLTGTNVPNMIKAE 69



 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 510 TGLDVANASLLDEGTAAAKHFHCVTGITNEQSSSCXNDCIPR 635
           TGL   NASLLDE TA+A+        T        + C P+
Sbjct: 154 TGLPTTNASLLDEATASAEAVALAARTTKRNKIVVDSFCHPQ 195


>AF125461-3|AAK18996.2|  282|Caenorhabditis elegans Hypothetical
           protein Y8A9A.5 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 274 SEPISEYDLIERVRLIAEKNEIWRSYIGMGYHNCCVPHAIMRNM 405
           S  +SE DLI+ +  I E +EI   Y    YHN    H   + +
Sbjct: 93  SANLSERDLIDHIMDITENSEIKELYFKSDYHNVIFLHNCFKGL 136


>Z81041-11|CAJ90515.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.3b protein.
          Length = 713

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 29  TIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTML 190
           + DGF K Y E +++ ++  +     ++D ++P    FPS+   P    +VT L
Sbjct: 55  SFDGFAKEYLERRIVKSLELIAECGVKADRVYP---SFPSKTF-PNHYTMVTGL 104


>Z81041-10|CAB02785.3|  743|Caenorhabditis elegans Hypothetical
           protein C27A7.3a protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 29  TIDGFHKTYFENKMLSAIRHVTTQSTRSDTLFPDRVDFPSRHIGPRDQDIVTML 190
           + DGF K Y E +++ ++  +     ++D ++P    FPS+   P    +VT L
Sbjct: 85  SFDGFAKEYLERRIVKSLELIAECGVKADRVYP---SFPSKTF-PNHYTMVTGL 134


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 623  IVRTRRTLF--VCYACDTVKVLRSSRTL---IQ*GSISNVQSSLSLTIV 492
            ++RT+  LF  +   CD VK+LRS  T    I+   I  VQS +   IV
Sbjct: 1001 VLRTKMELFRRLQNFCDAVKILRSQNTKWNGIKISQIDQVQSEIDTLIV 1049


>AY126454-1|AAM95163.1|  555|Caenorhabditis elegans nesprin-like
           protein protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 623 IVRTRRTLF--VCYACDTVKVLRSSRTL---IQ*GSISNVQSSLSLTIV 492
           ++RT+  LF  +   CD VK+LRS  T    I+   I  VQS +   IV
Sbjct: 313 VLRTKMELFRRLQNFCDAVKILRSQNTKWNGIKISQIDQVQSEIDTLIV 361


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -1

Query: 623  IVRTRRTLF--VCYACDTVKVLRSSRTL---IQ*GSISNVQSSLSLTIV 492
            ++RT+  LF  +   CD VK+LRS  T    I+   I  VQS +   IV
Sbjct: 1001 VLRTKMELFRRLQNFCDAVKILRSQNTKWNGIKISQIDQVQSEIDTLIV 1049


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,942,059
Number of Sequences: 27780
Number of extensions: 348989
Number of successful extensions: 816
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)