Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0620
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.5  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    27   2.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   4.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   6.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.0  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 359  CSAGRVCEINEHGDAMCNCIKDC 427
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -2

Query: 304 IRDLVEKVVNSGYFCLMYRFSSKLSDIPCSMCSASEMSPRP 182
           +R ++EK   +  FC++  + +K+S    S C+     P P
Sbjct: 140 LRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLP 180


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 576  ILDLXVVVLRTTALIRVXEA*ASWRYTSQSDCQVSLKF 463
            +L L +V+   T  I + E    W Y  +++  V LKF
Sbjct: 2339 LLRLEIVIKNATIFISIFEETGDWPYYIKNESGVLLKF 2376


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 439 CLVGTVLDAVTHGVSVFVDFADT-SC 365
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 270 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTET 401
           P+ +TF+  +L  R+  K  +W  L   S+ +  V  K+T  ET
Sbjct: 295 PQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKATLLET 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,039
Number of Sequences: 5004
Number of extensions: 31694
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)