Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0620
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0520 + 9092020-9092079,9092253-9093047                           29   3.5  
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    28   6.2  
06_01_0985 - 7646772-7647451,7647957-7648107                           28   6.2  
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576...    28   6.2  
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431           28   6.2  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    27   8.2  
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122...    27   8.2  

>03_02_0520 + 9092020-9092079,9092253-9093047
          Length = 284

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           VLD+ +++ +PA  +L+RWT  +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161


>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
            17466161-17466346
          Length = 1831

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
 Frame = -2

Query: 406  HGVSVFVDFADTSCAAVDF------QARVFHVDFFVFILFIRDLVEKVVNSGYF 263
            HG+ V  +FAD S   V++         +  V+ F  + FIR+L E  + S  F
Sbjct: 984  HGIGVQFEFADASVHIVNYLMSKSSNGALSRVNMFAMLQFIRNLTENNLTSVNF 1037


>06_01_0985 - 7646772-7647451,7647957-7648107
          Length = 276

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           VLDV +++ +P   +L+RWT  +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263


>05_06_0246 +
           26656629-26656907,26657001-26657228,26657595-26657630,
           26658362-26658475,26658562-26659167
          Length = 420

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 244 SSKLSDIPCSMCSASEMSPRPSCSDVG 164
           S+  SD PC + SAS  S  P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336


>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
          Length = 370

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           VLD+ ++  +PA  +L+RWT  +R
Sbjct: 196 VLDLMNIESLPAQYILKRWTREAR 219


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           +LDV +++ VP   +L+RWT  ++
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK 342


>01_05_0647 +
           23910318-23910694,23911732-23911867,23912067-23912277,
           23912357-23912724,23913793-23914081,23914173-23914372,
           23914452-23914646
          Length = 591

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -1

Query: 221 VLDVFSLRDVPAAELLRRWTFSSR 150
           +LDV +++++P   +L+RWT  ++
Sbjct: 365 ILDVNNIKEIPKQYILQRWTIDAK 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,571,157
Number of Sequences: 37544
Number of extensions: 260601
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)