Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0619
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    29   0.46 
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.1  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.4  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   4.2  
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    26   4.2  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       26   5.6  
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c...    26   5.6  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    26   5.6  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   7.4  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   7.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   9.8  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.8  

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 459 AERHSRWSKMQSRNYSSTATEEVRSERWREMQESRNNDICGRC 587
           A  H    KM S   + +   E R +RWRE  E RN D   RC
Sbjct: 149 AIEHPPPRKMTSSEKTRSENRE-RKKRWREQNEERNKDNDLRC 190


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +3

Query: 345 GQRERGTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSSTATEE 524
           GQR+   +R   + RS L  +    L      L    P  R++   +  + +YS+    E
Sbjct: 176 GQRQEDLQRQLENERSRLIARFSHSLYSFQHGLSFGSPQNRNTPLQRQSADSYSTPVCIE 235

Query: 525 VRSERWREM 551
           V SE W+++
Sbjct: 236 VDSEDWKDL 244


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 375 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 467
           QLDPR+ L  Q PRR LSR   RL    P  R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 363 TERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSSTATEEVRSERW 542
           T  P+LDP++GL+R  P  L   +P   P   A       +     Y  T  E   +  +
Sbjct: 379 TATPRLDPKTGLSRYRPGGLG--IP---PETEASHFEHLLRPYMEKYHMTLEEFTHAYNY 433

Query: 543 REMQE 557
           +++ E
Sbjct: 434 QQIHE 438


>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +3

Query: 369 RPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSSTATEEVRSERWRE 548
           RPQ DP  G +   P R++        SR    H    K++ R  S    EEVR +  RE
Sbjct: 6   RPQFDPARGHSEMAPTRIT-------SSRALPAH---LKLKYRQESQGTEEEVRKQDLRE 55


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 450 SRPAERHSRWSKMQSRNYSSTATEEVRSERWREMQESR 563
           SRP++     + M++  Y S  T +VR    RE+++ R
Sbjct: 73  SRPSKEGPNQALMKNPLYVSNVTRQVRDAVQRELEQQR 110


>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/78 (23%), Positives = 29/78 (37%)
 Frame = +3

Query: 330 LLAG*GQRERGTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSS 509
           L AG   R+        D +    +   +R      R H  RP +RH  +S  +      
Sbjct: 243 LTAGLNIRKSSANNSMRDDKKRNHKSSYKRSLSPSTRYHQDRPDKRHGTYSLEEIDKQRK 302

Query: 510 TATEEVRSERWREMQESR 563
                 R ++ +E Q+SR
Sbjct: 303 EFENRQRLQKEKEFQKSR 320


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +3

Query: 462 ERHSRWSKMQSRNYSS--TATEEVRSER--WREMQESR 563
           ER+  WS+  SR Y S  TAT+++++ +  W    +SR
Sbjct: 46  ERNLTWSQQTSRKYPSFFTATKDIQTPQVLWIGCSDSR 83


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 638 WRGNWYIILFERGSCMATPSTDIV--ISTFLHFAPSFASDFFSC 513
           WRG+WY+      + +  PS  I+   +T LH      +D + C
Sbjct: 108 WRGDWYVGKGVATASLQHPSGRIISLFNTHLHAPYGKGADTYLC 151


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 474 SNAFRLVYLGAAEELNEIGDVALDERVRSVD 382
           SN+  +VY+G  E  NE+ +V +D    ++D
Sbjct: 275 SNSDLIVYVGCGERGNEMAEVLMDFPELTID 305


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 368 FGAPFPLPLPCQKSRVDILELVLPLFDPFAPYSISL 261
           F   F  PLP +++R+ ILE+    F P  P S  L
Sbjct: 536 FDREFYFPLPNKQARMKILEINSLHFSPKIPESYLL 571


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
 Frame = -1

Query: 658 PRSTIS--GGEGTGTLYCSNVVPVWQHRP---QISLFRLSCISRHLSLRTS 521
           P+ST+S       GTLY SNV     H P   Q++ F L    R    R S
Sbjct: 260 PKSTLSKTNENSEGTLYDSNVAHGCTHPPSLNQLNKFHLDASPRQARPRRS 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,111
Number of Sequences: 5004
Number of extensions: 50446
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)