Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0619
(667 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40) 103 2e-22
SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20) 103 2e-22
SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3) 36 0.030
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8) 31 0.84
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012) 31 0.84
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 30 1.5
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 30 1.9
SB_40391| Best HMM Match : PSRP-3_Ycf65 (HMM E-Value=5) 29 2.6
SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099) 28 5.9
SB_25258| Best HMM Match : PID (HMM E-Value=1e-06) 28 5.9
SB_49422| Best HMM Match : GPS (HMM E-Value=1.9) 28 7.9
>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
Length = 837
Score = 103 bits (246), Expect = 2e-22
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Frame = +1
Query: 316 MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQ 495
MST+L W K KG G+ W+HAP+SL + V Y VKF G T+V + KG +
Sbjct: 1 MSTVLKWASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAIT 58
Query: 496 ETTVPQQLKKSEAKDGA-KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDK 666
+ +KKSEA A K +KV++ I++DGV+I++ +S +++ +PLH ISYCADDK
Sbjct: 59 KVQFANHIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKEVLHSYPLHHISYCADDK 116
>SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)
Length = 144
Score = 103 bits (246), Expect = 2e-22
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Frame = +1
Query: 316 MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQ 495
MST+L W K KG G+ W+HAP+SL + V Y VKF G T+V + KG +
Sbjct: 1 MSTVLKWASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAIT 58
Query: 496 ETTVPQQLKKSEAKDGA-KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDK 666
+ +KKSEA A K +KV++ I++DGV+I++ +S +++ +PLH ISYCADDK
Sbjct: 59 KVQFANHIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKEVLHSYPLHHISYCADDK 116
>SB_44865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 495
Score = 44.0 bits (99), Expect = 1e-04
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +1
Query: 376 NWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQETT--VPQQLKKSE-AKDGA 546
+W+H P+ L G V + VK+LG +V KG C +T + ++ K + + A
Sbjct: 168 DWLHQPEPLNDG-VPFYVKWLGTRRVFDAKG----PGCTDDTVREIVEEAKHLKMSHHEA 222
Query: 547 KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADD 663
K +KV +T+ + I + + + P++R+SYC D
Sbjct: 223 KLQKVLLTVYTKKITIADMETKVTKLEAPIYRVSYCTAD 261
>SB_40368| Best HMM Match : SASP_gamma (HMM E-Value=2.3)
Length = 325
Score = 35.9 bits (79), Expect = 0.030
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +3
Query: 351 RERGTERP--QLDPRSGLARQGPRRLSR*VPRLHPSR----PAERHSRWSK----MQSRN 500
RE E P QL +G A + P R SR P + P R PAE+H R SK +Q RN
Sbjct: 30 RETPPETPPVQLKHLAGPAEK-PHRPSRETPPVQPRRNPTCPAEKHHRSSKETPPVQPRN 88
Query: 501 YSSTATEEVRSERWREMQESRN 566
+ A + RS R ++ + RN
Sbjct: 89 LAGPAEKPHRSRRETQLAQPRN 110
>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
Length = 677
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 438 RLHPSRPAERHSRWSKMQ-SRNYSSTATEEVR---SERWREMQESRNNDICGRCC 590
R HP E +S + S+N+ ST+ E R SE+W+ SRN+ + G C
Sbjct: 23 RAHPFGEKEENSHHDLAEGSQNHLSTSETEKRNFQSEKWKIYSSSRNDGLGGDVC 77
>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
Length = 1348
Score = 31.1 bits (67), Expect = 0.84
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 379 WIHAPDSLVKGHVAYLVKFLGCTQVDQPKGI 471
W H P+ L+KG V Y ++LG V + G+
Sbjct: 1307 WHHEPEVLLKGSVNYTTQYLGSHMVKEISGV 1337
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 360 GTERPQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSSTATEEVRSER 539
GT++P++ R PR R PR S + R+SR S +S S + S R
Sbjct: 317 GTDQPEVTSPRATPRASPRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSSR 376
Query: 540 WREMQESRNN 569
+ SR +
Sbjct: 377 KLSRKSSRKS 386
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 465 RHSRWSKMQSRNYSSTATEEVRSERWREMQE 557
R RW++ + R S ATE RS+ W E ++
Sbjct: 570 RSDRWTETEYRELVSEATETPRSDGWTETED 600
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 465 RHSRWSKMQSRNYSSTATEEVRSERWREMQE 557
R RW++ + R S ATE RS+ W E ++
Sbjct: 738 RSDRWTETEFRELVSKATEMSRSDGWTETED 768
>SB_40391| Best HMM Match : PSRP-3_Ycf65 (HMM E-Value=5)
Length = 246
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 465 RHSRWSKMQSRNYSSTATEEVRSERWREMQE 557
R RW++ + R S ATE RS+ W E ++
Sbjct: 108 RSDRWTETEFRELVSKATEMSRSDGWTETED 138
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 465 RHSRWSKMQSRNYSSTATEEVRSERWREMQE 557
R W++ + R S AT+ RS+RW E ++
Sbjct: 129 RSDGWTETEDRELVSKATDLPRSDRWSETKD 159
>SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 366 ERPQLDPRSGLARQGPRRLSR*VPRL---HPSRPAE-RHSRWSKMQSR 497
+RPQL P G Q P +S VP+ HP +P + R QSR
Sbjct: 273 QRPQLPPVGGFPGQAPPHMSTHVPQAGFPHPDQPQRLQEVRGDARQSR 320
>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
Length = 2489
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 423 SR*VPRLHPSRPAERHSRWSKMQSRNYSSTATEEVRSER-WREMQESR 563
SR V +HPSRP R SK + S+ E+ S R REM SR
Sbjct: 1777 SRPVREMHPSRPV-REMHPSKPVREMHPSSPVREMHSSRAVREMHPSR 1823
>SB_25258| Best HMM Match : PID (HMM E-Value=1e-06)
Length = 214
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/78 (21%), Positives = 38/78 (48%)
Frame = +1
Query: 421 YLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSEAKDGAKCKKVEITISVDGVAIQE 600
+ K+LG ++P G+ G ++ ++ + +K E C K+ + + +G+ I E
Sbjct: 17 FQAKYLGFVSTNEP-GVAGIEQAVRK--IYDNVKLEEKS----CPKITLEVCKEGLKITE 69
Query: 601 PRSNNIMYQFPLHRISYC 654
+ + +P+ +SYC
Sbjct: 70 AKRHQDCRFYPIKDMSYC 87
>SB_49422| Best HMM Match : GPS (HMM E-Value=1.9)
Length = 352
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 432 VPRLHPSRPAERHSRWSKMQSRNYSSTATEEVRS 533
+P+ H +P H W +MQ + +EV S
Sbjct: 239 IPKSHTKQPKANHGTWPRMQPLTNKNVLADEVFS 272
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,798,143
Number of Sequences: 59808
Number of extensions: 417535
Number of successful extensions: 1776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1767
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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