Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0619
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    95   4e-20
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    95   4e-20
Z49968-11|CAN86616.1|  492|Caenorhabditis elegans Hypothetical p...    42   5e-04
Z49968-10|CAB54270.3|  490|Caenorhabditis elegans Hypothetical p...    42   5e-04
Z49968-9|CAB54271.3|  492|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z49968-6|CAB54272.2|  474|Caenorhabditis elegans Hypothetical pr...    42   5e-04
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    34   0.079
U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical p...    30   1.3  
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium bind...    28   5.2  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   5.2  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   5.2  
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z68301-7|CAA92627.2|  364|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical ...    28   6.8  
U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related...    27   9.1  

>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
 Frame = +1

Query: 370 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSE-AKDGA 546
           GR WIH PD L+ GHV Y+ +FLGC +  +  G    +         + LK+SE  ++ A
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103

Query: 547 KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDK 666
           K +KVEI IS+D V I + ++   MY FPL RIS+CADDK
Sbjct: 104 KLQKVEIRISIDNVIIADIKTKAPMYTFPLGRISFCADDK 143


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 45/100 (45%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
 Frame = +1

Query: 370 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSE-AKDGA 546
           GR WIH PD L+ GHV Y+ +FLGC +  +  G    +         + LK+SE  ++ A
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103

Query: 547 KCKKVEITISVDGVAIQEPRSNNIMYQFPLHRISYCADDK 666
           K +KVEI IS+D V I + ++   MY FPL RIS+CADDK
Sbjct: 104 KLQKVEIRISIDNVIIADIKTKAPMYTFPLGRISFCADDK 143


>Z49968-11|CAN86616.1|  492|Caenorhabditis elegans Hypothetical
           protein M110.5d protein.
          Length = 492

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 44/83 (53%)
 Frame = +1

Query: 415 VAYLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSEAKDGAKCKKVEITISVDGVAI 594
           ++Y  K +G   VD+    RG   C +     + + K+    GA   ++ + I++DG+ +
Sbjct: 52  ISYKGKLIGEQDVDKA---RGDAMCAEAMRTAKSIIKAA---GAHKTRITLQINIDGIKV 105

Query: 595 QEPRSNNIMYQFPLHRISYCADD 663
            + +S  +++ FP+ RIS+ A D
Sbjct: 106 LDEKSGAVLHNFPVSRISFIARD 128


>Z49968-10|CAB54270.3|  490|Caenorhabditis elegans Hypothetical
           protein M110.5a protein.
          Length = 490

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 44/83 (53%)
 Frame = +1

Query: 415 VAYLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSEAKDGAKCKKVEITISVDGVAI 594
           ++Y  K +G   VD+    RG   C +     + + K+    GA   ++ + I++DG+ +
Sbjct: 52  ISYKGKLIGEQDVDKA---RGDAMCAEAMRTAKSIIKAA---GAHKTRITLQINIDGIKV 105

Query: 595 QEPRSNNIMYQFPLHRISYCADD 663
            + +S  +++ FP+ RIS+ A D
Sbjct: 106 LDEKSGAVLHNFPVSRISFIARD 128


>Z49968-9|CAB54271.3|  492|Caenorhabditis elegans Hypothetical
           protein M110.5b protein.
          Length = 492

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 44/83 (53%)
 Frame = +1

Query: 415 VAYLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSEAKDGAKCKKVEITISVDGVAI 594
           ++Y  K +G   VD+    RG   C +     + + K+    GA   ++ + I++DG+ +
Sbjct: 52  ISYKGKLIGEQDVDKA---RGDAMCAEAMRTAKSIIKAA---GAHKTRITLQINIDGIKV 105

Query: 595 QEPRSNNIMYQFPLHRISYCADD 663
            + +S  +++ FP+ RIS+ A D
Sbjct: 106 LDEKSGAVLHNFPVSRISFIARD 128


>Z49968-6|CAB54272.2|  474|Caenorhabditis elegans Hypothetical
           protein M110.5c protein.
          Length = 474

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 22/83 (26%), Positives = 44/83 (53%)
 Frame = +1

Query: 415 VAYLVKFLGCTQVDQPKGIRGGQRCNQETTVPQQLKKSEAKDGAKCKKVEITISVDGVAI 594
           ++Y  K +G   VD+    RG   C +     + + K+    GA   ++ + I++DG+ +
Sbjct: 36  ISYKGKLIGEQDVDKA---RGDAMCAEAMRTAKSIIKAA---GAHKTRITLQINIDGIKV 89

Query: 595 QEPRSNNIMYQFPLHRISYCADD 663
            + +S  +++ FP+ RIS+ A D
Sbjct: 90  LDEKSGAVLHNFPVSRISFIARD 112


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = -2

Query: 627 LVHYIVRTWFLY--GNTVHRY---RYFDFLAFRAIFRFGLLQLLWNCSFLIASLTTSNAF 463
           +VH++V  WFL   G+  H Y     F + +  A F   +    W+C F I +L      
Sbjct: 601 IVHWVVLFWFLNVGGHATHYYSALEVFTYTSIPATFLSYIFAFFWSCLFEIPTLKLEKML 660

Query: 462 RLVYLGAAEELNEI 421
               LG     N++
Sbjct: 661 IEAILGTGRPSNKV 674


>U64857-15|AAC25858.1|  470|Caenorhabditis elegans Hypothetical
           protein C37C3.1 protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +3

Query: 363 TERPQLDPRS-GLARQGPRRLSR*VPRLHPSRPAERHSRWSKMQSRNYSST-ATEEVRS- 533
           ++R  L  RS  L++   RR SR + R     PA+RHSR S+  SR  S   +    RS 
Sbjct: 295 SKRRYLRSRSRSLSKSPARRRSRHLSRSGSRTPAQRHSRRSESTSRRRSGRHSRSRSRSP 354

Query: 534 ERWREMQESRN 566
            R R ++ SR+
Sbjct: 355 PRKRPVRRSRS 365


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
          protein F19C7.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 12 HHH*NNINNSWPSLVQ 59
          +HH  NI N WPSLVQ
Sbjct: 15 NHHEYNIKNPWPSLVQ 30


>AF099925-15|AAC69510.2|  585|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform a protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 499 TTVPQQLKKSEAKDGAKCKKVEITISVDGVA 591
           TTVP+++  +  K   K K VE+   +DG+A
Sbjct: 505 TTVPEEVTVTTKKPKQKLKPVEVAELIDGIA 535


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 499 TTVPQQLKKSEAKDGAKCKKVEITISVDGVA 591
           TTVP+++  +  K   K K VE+   +DG+A
Sbjct: 505 TTVPEEVTVTTKKPKQKLKPVEVAELIDGIA 535


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = +3

Query: 456  PAERHSRWSKMQSRNYSSTATEEVRSERWR-------EMQESRNNDICGRCCHTGTTFEQ 614
            PA R  RW  ++SR+Y          ER         + ++ R+ D  GR    G+++E 
Sbjct: 911  PALRRQRWGSLKSRSYDYAGEGRAPRERPHHPNYVSLDRRDDRDRDREGRYRRAGSSYEY 970

Query: 615  YNVP 626
              +P
Sbjct: 971  RRLP 974


>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
           protein C35C5.6 protein.
          Length = 1224

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +3

Query: 456 PAERHSRWSKMQSRNYSSTATEEVRSERWREMQESRNNDICGRCCHTGTTFEQYNV 623
           PA++ +R S+ +S +   + +E++ S  + +++   +N IC RC   G   E++++
Sbjct: 91  PADKSTRASR-ESTDSEVSESEQI-SNAYNKLKSDYSNIICSRCIIIGGKDEEFDL 144


>Z68301-7|CAA92627.2|  364|Caenorhabditis elegans Hypothetical
           protein W01B6.6 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 445 TQVDQPKGIRGGQRCNQETTVPQQLKKSEAKDGAKCKKVEITISVD 582
           T+  + K  +GG R  ++T   ++ KK    D  K KK   T+S D
Sbjct: 5   TRSRRKKKSKGGDRSERKTNKSERKKKGAKSDIGKKKKKNETVSKD 50


>AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical
           protein F48A11.4 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 666 FIVRAVRYPVERELVHYIVRTWFLYGNTVHRYRYFDFLAF 547
           F V +++    R L H+  + W ++G+ +  + YF  L F
Sbjct: 342 FFVSSLKICKSRTLPHFTTQNWLIFGSYLIYFLYFGNLFF 381


>U53149-4|AAA96120.1|  956|Caenorhabditis elegans Patched related
           family protein 1 protein.
          Length = 956

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 615 IVRTWFLYGNTVHRYR-YFDFLAFRAIFRFGLLQLLW 508
           I + +F  G  VH++R YF  L+F AI  F     LW
Sbjct: 8   IHKVFFRVGENVHKFRLYFLLLSF-AILTFSAFGFLW 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,975
Number of Sequences: 27780
Number of extensions: 297001
Number of successful extensions: 974
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)