Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0619
         (667 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63990.2 68418.m08034 3'(2'),5'-bisphosphate nucleotidase, pu...    29   2.8  
At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase, pu...    29   2.8  
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ...    28   4.9  
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote...    28   4.9  
At2g05060.1 68415.m00528 protein kinase family protein contains ...    28   4.9  

>At5g63990.2 68418.m08034 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 298

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 343 KGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRC 489
           +GK  G P GR+WI  P    +G +      +G   + + K + G   C
Sbjct: 120 RGKSEGGPKGRHWILDPIGGTRGFIRGEQYAIGLALLVEGKVVLGVMAC 168


>At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 357

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 343 KGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIRGGQRC 489
           +GK  G P GR+WI  P    +G +      +G   + + K + G   C
Sbjct: 120 RGKSEGGPKGRHWILDPIGGTRGFIRGEQYAIGLALLVEGKVVLGVMAC 168


>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
           thaliana}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 289

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = +3

Query: 450 SRPAERHSRWSKMQSRNYSSTATEEVRSERWREMQESRNNDICGRCCHTGTTFE-QYNVP 626
           SRP            RN S   T   ++  W E +E  +  I G       +FE +  V 
Sbjct: 46  SRPVNLTLSLKSKTLRNSSPVVTFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVG 105

Query: 627 VPSPPD 644
            P PP+
Sbjct: 106 FPEPPE 111


>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
           contains Pfam domain PF03194: LUC7 N_terminus
          Length = 402

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
 Frame = +3

Query: 348 QRERGTERPQLDPRSGLARQGPRRLSR*VPRLHP--SRPAERHSRWSKMQSRNYSSTATE 521
           ++ER  ER   +  S   R+  +  SR   R +   SR  +RH    + Q R+Y  + + 
Sbjct: 316 RKERSKERNSKERESSKDREKEQETSREHRRDYDRRSRDRDRHHDRDREQDRDYDRSHSR 375

Query: 522 EVRSERWREMQESRNND 572
             R  R R     R  D
Sbjct: 376 SRRRSRSRSRSRDRPRD 392


>At2g05060.1 68415.m00528 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 315

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +1

Query: 298 GKTNSRMSTLLFWQGKGKGN---GAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKG 468
           GK +S   +L+ ++ +  G     A    N IHA DSL+K     L +F GC+++ Q  G
Sbjct: 21  GKGSSGSVSLIKYKSRLDGQTLYAAVKTSNIIHA-DSLLK-EFQILSEFKGCSRIVQCYG 78

Query: 469 IRGGQRCNQETTVPQQLKKSEAKDGA 546
            +  +  N+E  V   +    A  G+
Sbjct: 79  TKVQETINEEGDVEFTIPMEYASGGS 104


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,849,130
Number of Sequences: 28952
Number of extensions: 282843
Number of successful extensions: 939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)