Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0618
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.25 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   2.3  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    20   9.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 0.25
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
 Frame = -2

Query: 151 CCTGKSSWRKLSRRIRCWEIMLK--CN 77
           C  G + W   +   RCWE+ +   CN
Sbjct: 518 CSLGINPWANCTASTRCWEVFMDGICN 544


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 240 CQGWYESCTGRGTGSGGKNSA 302
           C    ESC   G GS G+NSA
Sbjct: 15  CDDEVESCIAVGVGS-GRNSA 34


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 148 CTGKSSWR 125
           CTG +SWR
Sbjct: 253 CTGDTSWR 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,131
Number of Sequences: 336
Number of extensions: 1584
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)