Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0618
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    28   0.76 
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   1.8  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   3.1  

>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 14/52 (26%), Positives = 19/52 (36%)
 Frame = +2

Query: 77  ITFQHYLPTSNPSAQFPPRTFACATTKNXYRLDLRTLGLKMVVRTPKXLFPH 232
           +    Y P +N     PP   +     N     LRT  L M + TP    P+
Sbjct: 441 LRLDEYPPDANRGYNLPPAIISVFDENNTKLCSLRTAALLMFIPTPDFSMPY 492


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 47  WPKLKKNLINITFQHYLPTSNPSAQFPP 130
           WPKL+KN+  IT  +   T   S  F P
Sbjct: 746 WPKLRKNIRKITKPNGFTTDQHSQTFIP 773


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +2

Query: 14  YYNRQQIVPLXWPKLKKNLINITFQH---YLPTS---NPSAQFPP-RTFAC 145
           Y N + ++ + WP+L++ +I  T Q+   + P+S   N  + FP  R + C
Sbjct: 77  YINSKGLIRINWPQLQQQVIGPTEQYTGFHFPSSGRFNTQSTFPTIRNWIC 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,211
Number of Sequences: 5004
Number of extensions: 26181
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)