Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0618
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272     30   0.99 
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    28   3.0  
03_05_1113 - 30493597-30494385                                         28   3.0  
05_03_0274 - 11372054-11372347                                         28   4.0  
03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561     28   4.0  
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686...    28   4.0  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    27   5.3  
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783...    27   7.0  

>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
          Length = 786

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 29  QIVPLXWPKLKKNLINITFQHYLPTSNPSAQ 121
           Q V + W K + N IN +  HYLP  NP  Q
Sbjct: 322 QNVSMGWFKQEPNGINFSAAHYLPRCNPFNQ 352


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 166 IXILGCCTGKSSWRKLSRRIRCWE 95
           I + GCCT +   RK+   I CW+
Sbjct: 208 IRLFGCCTERQYKRKIKLSIWCWK 231


>03_05_1113 - 30493597-30494385
          Length = 262

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +3

Query: 258 SCTGRGTGSGGKNSAMYAVTLRGSP 332
           SC G G G+GGK SA  A  L GSP
Sbjct: 24  SCDGGGGGAGGK-SATAACALLGSP 47


>05_03_0274 - 11372054-11372347
          Length = 97

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 231 TFVCQGWYESCTGRGTGSGGK 293
           +F+  GW E+ T  G GSGG+
Sbjct: 20  SFLGSGWDEAATNEGIGSGGR 40


>03_05_0362 + 23455372-23455619,23456570-23456966,23457400-23457561
          Length = 268

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 205 SNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRCVARQTEIL 345
           SN   S S  S  R GM+  PA+E ++EAR    +  R  + +T +L
Sbjct: 169 SNESGSSSVASTPR-GMSCRPAKEALEEARAKGSLVDRIASLETRVL 214


>03_05_0026 +
           19966616-19966703,19967992-19968058,19968599-19968677,
           19969140-19969231,19969961-19970396,19973749-19974099
          Length = 370

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 259 DSYHP*QTKVWKQTFWCSNHH 197
           +S+   QTKVWK T   SNHH
Sbjct: 70  NSWDTQQTKVWKMTKLPSNHH 90


>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 238 FVRDGMNRVPAEELVQEARTPPCMQSRCVAR 330
           F  D +N   AEE+++  RTP C+Q+  V R
Sbjct: 651 FRNDEVNAYNAEEVMEALRTPMCVQTLKVWR 681


>01_03_0017 +
           11677029-11677100,11677992-11678030,11678169-11678341,
           11679068-11679284,11679518-11679688,11679781-11679941,
           11680025-11681069,11681320-11681466,11681547-11681774,
           11681863-11682020,11682124-11682493
          Length = 926

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 53  KLKKNLINITFQHYLPTSNPSAQFPPRTFACATTKNXYRLDLRTLGLKMVVRTP 214
           +L + L+ +++ H  P    S  F PR  AC T  +  R+ +  L L+   R P
Sbjct: 269 ELSRCLLLMSYIHGSPLLESSKAFSPREAACVTASSLGRVLMLDLILRNEDRLP 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,008,660
Number of Sequences: 37544
Number of extensions: 183399
Number of successful extensions: 462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)