Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0618
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           31   0.44 
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_57965| Best HMM Match : WSC (HMM E-Value=0.00054)                   27   7.2  
SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   27   9.5  

>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 141 PVQQPRIXIXLTFVLWG*RWWFEHQXVCFHTFVCQGWY 254
           PV   R+ +   FV  G   WF HQ  C H + C  W+
Sbjct: 850 PVVLSRVAVTSGFVTSGCHQWFCHQWFC-HQWFCHQWF 886


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 50   PKLKKNLINITF-QH-YLPTSNPSAQFPPRTFACATTKNXYRLDLRTLGLKM 199
            P L++NL+   F QH Y P+ N +++F         TKN  +L +R +  K+
Sbjct: 1146 PDLRRNLVIQLFNQHGYFPSENITSEFQQAHVEVFPTKNCLQLKIREVRQKL 1197


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 209 FEPPSLAPEYEGQXDXDSWLL--HRQKFLEETEQKD 108
           FE PS+APE EG+   DSW     +Q   E  E +D
Sbjct: 693 FEAPSIAPEREGE---DSWCSDGEKQDVSESDESQD 725


>SB_57965| Best HMM Match : WSC (HMM E-Value=0.00054)
          Length = 221

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 199 GGSNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRC 321
           GGS  + +    + V   +  VP E  VQE  T P +   C
Sbjct: 77  GGSQVRVTSCRRTLVNGSVVEVPTELCVQETGTTPSLTQTC 117


>SB_39420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 993

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 339 LSLASHAT*LHTWRSSCLLNQFLCRYTIHTIPDK 238
           +S  +++T L+T++++     F C Y  H +P+K
Sbjct: 161 ISALAYSTNLYTYKATKKEGAFYCSYRWHPLPEK 194



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 339 LSLASHAT*LHTWRSSCLLNQFLCRYTIHTIPDK 238
           +S  +++T L+T++++     F C Y  H +P+K
Sbjct: 556 ISALAYSTNLYTYKATKKEGAFYCSYRWHPLPEK 589


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 209 FEPPSLAPEYEGQXDXDSWLLHRQKFLEETEQK 111
           FEP +L  E  G    + WL   Q+ LEE ++K
Sbjct: 633 FEPFNLETENRGSVKAEKWLNSVQQELEEEKKK 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,472
Number of Sequences: 59808
Number of extensions: 197309
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)