Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0618
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002764-1|AAH02764.2|  528|Homo sapiens Wolf-Hirschhorn syndrom...    29   9.7  
AL132868-2|CAM15219.1|  539|Homo sapiens Wolf-Hirschhorn syndrom...    29   9.7  
AF131751-1|AAD20034.1|  265|Homo sapiens human Wolf-Hirschhorn s...    29   9.7  
AF101434-1|AAC72982.1|  525|Homo sapiens Wolf-Hirschhorn syndrom...    29   9.7  
AB044549-1|BAB18651.1|  549|Homo sapiens Wolf-Hirshhorn syndrome...    29   9.7  

>BC002764-1|AAH02764.2|  528|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 184 SGAKDGGSNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRCVARQTE 339
           S  K G  N + ++ + S++    + VPA   +  + TPP   SR  +R  E
Sbjct: 306 STQKLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASRPPE 357


>AL132868-2|CAM15219.1|  539|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 184 SGAKDGGSNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRCVARQTE 339
           S  K G  N + ++ + S++    + VPA   +  + TPP   SR  +R  E
Sbjct: 317 STQKLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASRPPE 368


>AF131751-1|AAD20034.1|  265|Homo sapiens human Wolf-Hirschhorn
           syndrome candidate 2 protein protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 184 SGAKDGGSNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRCVARQTE 339
           S  K G  N + ++ + S++    + VPA   +  + TPP   SR  +R  E
Sbjct: 43  STQKLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASRPPE 94


>AF101434-1|AAC72982.1|  525|Homo sapiens Wolf-Hirschhorn syndrome
           candidate 2 protein protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 184 SGAKDGGSNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRCVARQTE 339
           S  K G  N + ++ + S++    + VPA   +  + TPP   SR  +R  E
Sbjct: 303 STQKLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASRPPE 354


>AB044549-1|BAB18651.1|  549|Homo sapiens Wolf-Hirshhorn syndrome
           candidate 2 protein protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 184 SGAKDGGSNTKXSVSTLSFVRDGMNRVPAEELVQEARTPPCMQSRCVARQTE 339
           S  K G  N + ++ + S++    + VPA   +  + TPP   SR  +R  E
Sbjct: 327 STQKLGSLNNEPALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASRPPE 378


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,868,312
Number of Sequences: 237096
Number of extensions: 969693
Number of successful extensions: 1939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1939
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)