BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0618
(449 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D90403-1|BAA14399.1| 2833|Drosophila melanogaster inositol 1,4,5... 29 3.8
AJ238949-1|CAB51853.1| 2828|Drosophila melanogaster inositol 1,4... 29 3.8
>D90403-1|BAA14399.1| 2833|Drosophila melanogaster inositol
1,4,5-trisphosphate receptorprotein.
Length = 2833
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 95 LPTSNPSAQFPPRTFACATTKNXYRLDLRTLGLK 196
+P++ PS +PPR A ATT +DL ++G++
Sbjct: 1107 IPSTVPSL-WPPRCAAAATTARQKNIDLESIGVQ 1139
>AJ238949-1|CAB51853.1| 2828|Drosophila melanogaster inositol
1,4,5-trisphosphate receptorprotein.
Length = 2828
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 95 LPTSNPSAQFPPRTFACATTKNXYRLDLRTLGLK 196
+P++ PS +PPR A ATT +DL ++G++
Sbjct: 1098 IPSTVPSL-WPPRCAAAATTARQKNIDLESIGVQ 1130
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,438,079
Number of Sequences: 53049
Number of extensions: 302447
Number of successful extensions: 1054
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -