Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0615
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140 30 1.9
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476... 30 1.9
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 30 1.9
11_03_0151 - 10816905-10816977,10817090-10817421,10817884-108179... 29 4.4
06_03_0568 + 22351552-22351679,22352176-22352227,22353044-223531... 29 4.4
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 28 5.8
02_04_0594 - 24182946-24183641,24184122-24184476,24184553-241847... 28 5.8
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 28 7.7
01_05_0024 - 17262504-17263308,17264251-17264399,17264879-172649... 28 7.7
>10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140
Length = 309
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -1
Query: 400 ATLGTPEKLPAGPWSAKSSISCRTLPILRCKVAAFQFGWS-SRYSCM 263
AT GTP L AGP S +++P +C AA W+ S + C+
Sbjct: 23 ATPGTPAPLFAGPRVDSLSYERKSMPRCKCLPAAVAEAWAPSAHGCV 69
>07_01_0636 +
4761858-4762421,4763596-4763819,4763961-4764309,
4764648-4765331
Length = 606
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +1
Query: 121 EDPYFEIDEVIGKPWRIYYTWNMRFEKKCMDMT-FKNATPKIVQRVGTTCTSILMTSRTG 297
+D ++ E + + + YT MR + C+ + ++ A+P++V+ + C +++
Sbjct: 463 QDADIQVSEYLPRRHGMSYTDMMRRSRFCLCPSGYEVASPRVVEAIYLECVPVVIGDDYT 522
Query: 298 MPPPYILVWARCGTR 342
+P +L WA R
Sbjct: 523 LPFADVLNWAAFSVR 537
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 395 CGT*WKYNCEPAHCTPPQVSTETGPRLQVSRNDRLP 502
CG W C P HC + + L+V N LP
Sbjct: 1003 CGNKWYSKCSPVHCRKLDIPSSEVALLKVKTNINLP 1038
>11_03_0151 -
10816905-10816977,10817090-10817421,10817884-10817967,
10818045-10818092,10818233-10818287,10818378-10818433,
10818543-10818627,10819810-10819844
Length = 255
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 181 WNMRFEKKCMDMTFKNATPKIVQRVGTTCTSILMTSRTGMPPPYILVWARC-GTRCYFLP 357
W + + +T T +I + +G T S ++T W R T +FLP
Sbjct: 136 WYQPLDPSQLSLTHFQFT-RIGRFLGQTLVSKQFITQTEATEFLACSWERLYSTIDFFLP 194
Query: 358 TKDPQAVSLEYL 393
K+PQ SLE+L
Sbjct: 195 AKNPQLKSLEFL 206
>06_03_0568 +
22351552-22351679,22352176-22352227,22353044-22353117,
22353233-22353322,22353833-22353976,22354885-22354973,
22355539-22355612,22357233-22357317,22357677-22357952,
22358392-22358420
Length = 346
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 165 PWLPYHFIDFEIRIFL*SLTYSIVFLE 85
PW+ IDF I +F S+ Y + FLE
Sbjct: 163 PWMAATLIDFYINVFAISVNYILWFLE 189
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -1
Query: 439 GTVCRFTVILPSRATLGTPEK---LPAGPWSAKSSISCRTLPILRCKVAAF 296
G + + ++LP TL + LP GPW+A + P LR +V AF
Sbjct: 175 GDILKPDLVLPLMETLPIEQLASYLPEGPWTAGDILELLQSPPLRQQVEAF 225
>02_04_0594 -
24182946-24183641,24184122-24184476,24184553-24184743,
24184840-24185046
Length = 482
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 220 FKNATPKIVQRVGTTCTSILMTSRTGMPPPY--ILVWAR 330
F+ A+P++V+ V C ++++ G PPP+ +L W +
Sbjct: 377 FEVASPRVVESVFAGCVPVIISE--GYPPPFGDVLDWGK 413
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 294 WNAATLHLSMGKVRHEMLLFADQG 365
W+A T L MG+ R LLFA G
Sbjct: 789 WSARTAALGMGRARRSKLLFAVDG 812
>01_05_0024 -
17262504-17263308,17264251-17264399,17264879-17264978,
17265829-17265953,17267565-17267743,17269648-17270698
Length = 802
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 339 RAAPCPY*DVRWRHSSSAGHQDTRACRSNS 250
+AAP P +VR++H+SS G +TR ++ S
Sbjct: 321 KAAPGPPAEVRYQHASSMGAVETRKGKTMS 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,927,570
Number of Sequences: 37544
Number of extensions: 463583
Number of successful extensions: 1235
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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