Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0615
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)                  32   0.37 
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           30   1.5  
SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)          29   3.4  
SB_12634| Best HMM Match : Phage_fiber (HMM E-Value=8.7)               29   4.5  
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)               28   7.9  
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)                   28   7.9  
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_47305| Best HMM Match : I-set (HMM E-Value=0)                       28   7.9  

>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
          Length = 241

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 162 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 43
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 97  WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 136


>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 162 WLPYHFIDFEIRIFL*SLTYSIVFLETFRFYFGH*LAANN 43
           WLP H + F I   L S   S +FL  F F+ GH  +A N
Sbjct: 252 WLPLHVLHFLIYFDLMSFLCSPLFLRLFGFWLGHANSALN 291


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 422 EPAHCTPPQVSTETGPRLQVSRNDRLPHGISSL 520
           EPAH  P  ++TET P +Q       P  + SL
Sbjct: 393 EPAHLNPLPMTTETPPEIQAEMTKDTPQHVRSL 425


>SB_47878| Best HMM Match : PARP_regulatory (HMM E-Value=0.65)
          Length = 223

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +2

Query: 434 CTPPQVSTETGPRLQVSRNDRLPHGISSLSARA--DEPPYRSELDTVT 571
           C    +    GP   V    R+   IS   A A  DEPPY  ELD +T
Sbjct: 103 CPEDILRLHRGPTFSVLEQLRVTFDISREMALATSDEPPYYGELDIIT 150


>SB_12634| Best HMM Match : Phage_fiber (HMM E-Value=8.7)
          Length = 59

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = -2

Query: 309 RWR---HSSSAGHQDTRA-CRSNSLNDFRRRIFKRHVHTL 202
           +WR   H+ +  H DT   C   +LND      KRH HT+
Sbjct: 3   KWRKPGHTHTVAHNDTHTTCTHCTLNDTHSVGTKRHAHTV 42


>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
          Length = 704

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 476 QVSRNDRLPHGISSLSARADEPPYRSEL 559
           ++SRND +   IS+ S RA+ PP + +L
Sbjct: 572 RMSRNDSIGSSISNSSNRANNPPQKRKL 599


>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
          Length = 428

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 303 RHSSSAGHQDTRACRSNSLNDFRRRIFKRHVHT 205
           RH  S  HQ ++   S+S ++ R R  +RH H+
Sbjct: 37  RHKHSRKHQHSKQSDSDSEDEHRHRSSRRHRHS 69


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 441 GVQCAGSQLYFHHVPH*VLQRNCLRVLGRQ--KVASRAAPCPY 319
           G Q   +Q+Y HHV   +L+RN    LG+Q  K+A+     PY
Sbjct: 371 GAQGMKTQVYLHHVLRQLLRRN----LGQQALKIANTCTDLPY 409


>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
          Length = 5832

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +3

Query: 489  MTDCHMGSRHYQPELTNHRIVQNWTRSPQNSPSATASILV 608
            + D H+G +HY PE     +  +W+++ +   +A  +  V
Sbjct: 5725 IVDLHVGEKHYGPEFAEEEL--DWSKTARKGENARITFTV 5762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,725,682
Number of Sequences: 59808
Number of extensions: 531718
Number of successful extensions: 1212
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)