Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0612
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85...    30   0.62 
10_08_0396 - 17565722-17566027                                         27   7.6  
03_05_0614 - 26129627-26129784,26130110-26130282,26131236-261312...    27   7.6  
02_03_0155 + 15805683-15805743,15805824-15806105,15808293-158089...    27   7.6  

>02_01_0113 -
           854108-854302,854399-854542,854658-854893,855036-855315,
           856891-857031,857259-857372
          Length = 369

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 304 RXLRRHXEAPRCPLLRCSSTGFCCCS---ESSLVKEVKA 197
           R LR H E P    ++CS  G C CS   +S+L K +KA
Sbjct: 230 RHLRAHEEVPSTERIKCSFEG-CECSFSNKSNLTKHIKA 267


>10_08_0396 - 17565722-17566027
          Length = 101

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 364 DLSDVPNWAGSFNGNRWWCMRXLRRH 287
           DLS +    G F G R WC+   R H
Sbjct: 24  DLSCLGGGRGGFGGGRRWCLACERAH 49


>03_05_0614 -
           26129627-26129784,26130110-26130282,26131236-26131284,
           26132649-26132697,26132987-26133082
          Length = 174

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 313 WCMRXLRRHXEAPRCPLLRCSST 245
           WC + L  H  +P+ P  RC  T
Sbjct: 117 WCRKKLGHHAASPKGPCWRCHMT 139


>02_03_0155 +
           15805683-15805743,15805824-15806105,15808293-15808959,
           15809440-15810490
          Length = 686

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 LEDKTAFTSLTNDDSEQQQKPVEEHRRSGHR 275
           + +  A+TS +N D+E++ +  +E+RR   R
Sbjct: 552 ISESGAYTSSSNQDTEEENRRKKENRRKKKR 582


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,781,741
Number of Sequences: 37544
Number of extensions: 133807
Number of successful extensions: 266
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)